DRSC/TRiP Functional Genomics Resources

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Protein Alignment Drgx and Hoxa5

DIOPT Version :10

Sequence 1:NP_001097075.2 Gene:Drgx / 5740176 FlyBaseID:FBgn0085369 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_077365.1 Gene:Hoxa5 / 79241 RGDID:620609 Length:381 Species:Rattus norvegicus


Alignment Length:103 Identity:34/103 - (33%)
Similarity:51/103 - (49%) Gaps:16/103 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PHPPRLPTLDYPFAATHPYTSYSYHPAIHDETFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDV 79
            |.||..|.: ||:..       ..|  |..:.....:.:|.||.:|..|..|||..|   |:...
  Rat   279 PAPPAQPQI-YPWMR-------KLH--ISHDNIGGPEGKRARTAYTRYQTLELEKEF---HFNRY 330

  Fly    80 FTRE---DLAMKINLTEARVQVWFQNRRAKWRKAERLK 114
            .||.   ::|..:.|:|.::::||||||.||:|..:||
  Rat   331 LTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLK 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrgxNP_001097075.2 Homeodomain 53..109 CDD:459649 23/58 (40%)
OAR 428..446 CDD:461067
Hoxa5NP_077365.1 Homeodomain 307..363 CDD:459649 23/58 (40%)
Blue background indicates that the domain is not in the aligned region.

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