DRSC/TRiP Functional Genomics Resources

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Protein Alignment Drgx and shox

DIOPT Version :10

Sequence 1:NP_001097075.2 Gene:Drgx / 5740176 FlyBaseID:FBgn0085369 Length:587 Species:Drosophila melanogaster
Sequence 2:XP_005167911.1 Gene:shox / 664748 ZFINID:ZDB-GENE-051030-21 Length:304 Species:Danio rerio


Alignment Length:220 Identity:74/220 - (33%)
Similarity:108/220 - (49%) Gaps:45/220 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAERLKD 115
            ||||:||.|||:||.|||..|.:|||||.|.||:|:.::.|:||||||||||||||.||.|   :
Zfish   108 KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQE---N 169

  Fly   116 EQRKRENGESSSSLDKLHDSRESSPDITGEIDDDMDDL-PPRQRSHSPLANGQMEQQHSHSHSHS 179
            :..|.....::|.|    |:...:|.:      :|..| .|.|:..:.|   |:|...:|||.|.
Zfish   170 QMHKGVILGTASHL----DACRVAPYV------NMGALRMPFQQVQAQL---QLEGVGTHSHPHL 221

  Fly   180 HSR-----------SPGGGMHLDSSDNERPLSSNQLTATPHSASQSLGSISAGSPSPSGMHRERE 233
            |..           .|..|:         |::|   .|...||:.::.:.:..:...|.:...|.
Zfish   222 HPHLAAHAPYLMFPPPPFGL---------PIAS---LADSASAAAAVVAAAKSNSKNSSIADLRL 274

  Fly   234 HTPLVGGGGQGP-----SSPSNSRN 253
            ...|:||....|     ::|...:|
Zfish   275 KAGLLGGHWLSPFQAQITAPGPYKN 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrgxNP_001097075.2 Homeodomain 53..109 CDD:459649 37/55 (67%)
OAR 428..446 CDD:461067
shoxXP_005167911.1 SCP-1 <1..>145 CDD:114219 24/36 (67%)
Homeodomain 110..166 CDD:459649 37/55 (67%)
Blue background indicates that the domain is not in the aligned region.

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