DRSC/TRiP Functional Genomics Resources

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Protein Alignment Drgx and Crx

DIOPT Version :10

Sequence 1:NP_001097075.2 Gene:Drgx / 5740176 FlyBaseID:FBgn0085369 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_068627.2 Gene:Crx / 60446 RGDID:620511 Length:299 Species:Rattus norvegicus


Alignment Length:401 Identity:107/401 - (26%)
Similarity:156/401 - (38%) Gaps:146/401 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFCYQCPPALHPCGPH------PPRLPTLDYPFAATHPYTSYSYHPAIHDETFVRRKQRRNRTTF 59
            |..|..|      |||      ....|::|....|. ||:|            ..|||||.||||
  Rat     1 MMTYMNP------GPHYSVNALALSGPSVDLMHQAV-PYSS------------APRKQRRERTTF 46

  Fly    60 TLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAERLKDEQRKRENG- 123
            |..||||||..||:|.||||:.||::|:||||.|:||||||:|||||.|: :|.:.:|:::..| 
  Rat    47 TRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQ-QRQQQKQQQQPPGV 110

  Fly   124 --ESSSSLDKLHDSRESSPDITGE---IDDDMDDLPPRQRSHSPLANGQMEQQHSHSHSHSHSRS 183
              ::..:..|...|...|.|:..:   |.|          |:||...|                 
  Rat   111 QAKARPAKRKAGTSPRPSTDVCTDPLGISD----------SYSPSLPG----------------- 148

  Fly   184 PGGGMHLDSSDNERPLSSNQLTATPHSASQSLGSISAGSPSPSGMHREREHTPLVGGGGQGPSSP 248
            |.|                  :.|...|:.|:.|.::.||.|     |.:...||..|....|: 
  Rat   149 PSG------------------SPTTAVATVSIWSPASESPLP-----EAQRAGLVASGSSLTSA- 189

  Fly   249 SNSRNTDSPIEVGGPMSLTTGSRMAASSNNSASSTPTP--------TTPHAPQMPHSSAAAAAAF 305
                          |.::|.....|..|:.||.::|:.        .:|..||:           
  Rat   190 --------------PYAMTYAPASAFCSSPSAYASPSSYFSGLDPYLSPMVPQL----------- 229

  Fly   306 GSHIFGNFGGGSNASDSNCGFRPVLSEQS------AVAAAAAAAAAQRSANHPPL----FLPPHL 360
                     ||           |.||..|      ::|.:..:.:.|..:.:.|:    |..|..
  Rat   230 ---------GG-----------PALSPLSGPSVGPSLAQSPTSLSGQSYSTYSPVDSLEFKDPTG 274

  Fly   361 AAQFTHQPLFP 371
            ..:||:.|:.|
  Rat   275 TWKFTYNPMDP 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrgxNP_001097075.2 Homeodomain 53..109 CDD:459649 39/55 (71%)
OAR 428..446 CDD:461067
CrxNP_068627.2 Homeodomain 40..93 CDD:459649 37/52 (71%)
TF_Otx 164..249 CDD:427350 26/135 (19%)
Blue background indicates that the domain is not in the aligned region.

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