DRSC/TRiP Functional Genomics Resources

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Protein Alignment Drgx and abd-A

DIOPT Version :10

Sequence 1:NP_001097075.2 Gene:Drgx / 5740176 FlyBaseID:FBgn0085369 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster


Alignment Length:441 Identity:101/441 - (22%)
Similarity:151/441 - (34%) Gaps:160/441 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 LSSNQLTATPHSASQS--LGSISAGSPSPSGMHREREHTPLVGGGGQGPSSPSNSRNTDSPIEVG 261
            :||:.||.||.::|.:  ..:::|.:.|.|.                ..|:.|:|.|..|....|
  Fly    20 ISSHHLTTTPPNSSSAAVAAALAAAAASASA----------------SVSASSSSNNNSSNTIAG 68

  Fly   262 GPMSLTTGSRMAASS---NNS------ASSTPTPTTPHAPQMPHSSAAAAAAFGSHIFGNFGGGS 317
            ...|.|..|..:.||   |||      .|.:|:..:.|..|.|||..::::.|..|         
  Fly    69 SNTSNTNNSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQH--------- 124

  Fly   318 NASDSNCGFRPVLSEQ---------------------SAVAAA-----------AAAAAAQRSAN 350
                     .|.:.:|                     |:::||           ..||||..|..
  Fly   125 ---------HPQVQQQHLNHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASHG 180

  Fly   351 HPPLFLPPHLAAQFTHQPLFPGLKGVSPFQSLCSCCSLKPPPPPGSSVVAPLSIPVSSSSAASSP 415
            |             .||.|                  |..||..|:|         .:..::.||
  Fly   181 H-------------AHQQL------------------LLTPPSAGNS---------QAGDSSCSP 205

  Fly   416 ESPKSSGQGSVH------DPRSNSVAELRRKAQEHSAALLQSLHAAAAAGLAFPGLHLPPLSFAH 474
             ||.:||..|:|      .|.|.|.:.....|...:||      |||||..|.....:|....  
  Fly   206 -SPSASGSSSLHRSLNDNSPGSASASASASAASSVAAA------AAAAAAAASSSFAIPTSKM-- 261

  Fly   475 HPALGQHVVNHNNNNTMRMKHEAQDMTMNGLGPGSGSGSGSGSAGGGT--SSAALLDLAESAVAY 537
            :|.:..|..:|..              ::|:...:|....|.|....|  :|...:.:..||.|.
  Fly   262 YPYVSNHPSSHGG--------------LSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQ 312

  Fly   538 --QQQQHATLSPPTTPTQQSSG-------GVAATEGSPGSGAIAGSGSLNG 579
              |..|||| :..:..:..|:|       |.|.|:  |.||.:.|:|...|
  Fly   313 FAQFYQHAT-AAASAVSAASAGAIGVDSLGNACTQ--PASGVMPGAGGAGG 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrgxNP_001097075.2 Homeodomain 53..109 CDD:459649
OAR 428..446 CDD:461067 4/17 (24%)
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649
Abdominal-A 456..478 CDD:403567
Blue background indicates that the domain is not in the aligned region.

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