DRSC/TRiP Functional Genomics Resources

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Protein Alignment Drgx and hoxd3a

DIOPT Version :10

Sequence 1:NP_001097075.2 Gene:Drgx / 5740176 FlyBaseID:FBgn0085369 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:339 Identity:76/339 - (22%)
Similarity:107/339 - (31%) Gaps:149/339 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CPPALHPCGPHPPRLPTLDYPFAATHPYTSYSYHPAIHDETFVRRKQRRNRTTFTLQQLEELETA 70
            ||.|...|....|..|.                             .:|.||.:|..||.|||..
Zfish   144 CPAAGETCDDKSPPGPA-----------------------------SKRVRTAYTSAQLVELEKE 179

  Fly    71 FAQTHYPDVFTREDLAMKINLTEARVQVWFQNRRAKWRKAERLKDEQRKRENGESSSSLDKLHDS 135
            |....|.....|.::|..:||||.::::||||||.|::|.::.|...                  
Zfish   180 FHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM------------------ 226

  Fly   136 RESSPDITGEIDDDMDDLPPRQRSHSPLANGQMEQQHSHSHSHSHSRSP--GGGMHLDSSDNERP 198
                                    ||||             .||..|||  .|..|:.       
Zfish   227 ------------------------HSPL-------------GHSPDRSPPLSGSNHIG------- 247

  Fly   199 LSSNQLTATPHSASQSLGSISAGSPSPSGMHRERE-------HTPLVGG---------------- 240
             .|.||        .::.|:|..:|||....:.::       :|..:||                
Zfish   248 -YSGQL--------PNVNSLSYDAPSPPSFAKPQQNIYGLAAYTAPLGGCIPQQKRYPGTEYDHH 303

  Fly   241 GGQGPSSPSNSRNTDSPIEVGGPMSLTTGSRMAASSNNSASSTPTPTTP--HAPQMPHSSAA--- 300
            ..||..|.:|:....||:.|||               |...|.|. :.|  :...:||.|:|   
Zfish   304 SMQGNGSFANANLQSSPVYVGG---------------NFVDSMPA-SGPMFNLGHLPHPSSASVD 352

  Fly   301 ---AAAAFGSHIFG 311
               ||...|:|..|
Zfish   353 YSCAAQIPGNHHHG 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DrgxNP_001097075.2 Homeodomain 53..109 CDD:459649 24/55 (44%)
OAR 428..446 CDD:461067
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 6/47 (13%)
COG5576 116..237 CDD:227863 38/176 (22%)
Antp-type hexapeptide 126..131
Homeodomain 162..218 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 11/81 (14%)
DUF4074 333..394 CDD:463833 10/35 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396 1/3 (33%)
Blue background indicates that the domain is not in the aligned region.

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