DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34342 and FAR1

DIOPT Version :9

Sequence 1:NP_001097509.3 Gene:CG34342 / 5740152 FlyBaseID:FBgn0085371 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_197642.1 Gene:FAR1 / 832311 AraportID:AT5G22500 Length:491 Species:Arabidopsis thaliana


Alignment Length:515 Identity:125/515 - (24%)
Similarity:226/515 - (43%) Gaps:100/515 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 FYSNATVLITGGTGFVGKVLTEKLLR-SFGLRKIYMLIRSKDNMSVQERLKGFFNE-SIF----N 131
            |..|.|:||||..||:.|||.||:|| ...::|||:|:|:.|..|..:||:....| .:|    |
plant     8 FLGNKTILITGAPGFLAKVLVEKILRLQPNVKKIYLLLRAPDEKSAMQRLRSEVMEIDLFKVLRN 72

  Fly   132 RMREESPQLL--AKVHPIRADYSAIDLDIDSADRAM-LSSEVQIVFNVVASVKFNEKLSDAIDIN 193
            .:.|::...|  .|:.|:..|.|..:|.:...|... :.||:.|:.|:.|:..|:|:....:.||
plant    73 NLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTNFDERYDIGLGIN 137

  Fly   194 VLGTKKILDLVMEMKHLKSFVHISTLYCNCNRK-FIKEQVY----------------ENEIGYEK 241
            ..|...:|:...:....:..:|:||.|.:..:. .:.|:.:                |:::..:|
plant   138 TFGALNVLNFAKKCVKGQLLLHVSTAYISGEQPGLLLEKPFKMGETLSGDRELDINIEHDLMKQK 202

  Fly   242 IMQIYRTFDDETLEKMR-----HCLIGQMPNTYTMTKKCAENLVNHRAFHMPAGIFRPPIVMSTY 301
            :.::....|:|..:.|:     ...:...||||..||...|.|:.....::|..|.||.::.||.
plant   203 LKELQDCSDEEISQTMKDFGMARAKLHGWPNTYVFTKAMGEMLMGKYRENLPLVIIRPTMITSTI 267

  Fly   302 KDPFPGWTDNLYGPSGLCTWSARGLVRCIYGKASCKANMVPADYVVNAMIATAWDIARRFKLRES 366
            .:|||||.:.|.....:.....:|.::|....::...:::|||.|||||:|.|           :
plant   268 AEPFPGWIEGLKTLDSVIVAYGKGRLKCFLADSNSVFDLIPADMVVNAMVAAA-----------T 321

  Fly   367 KVDGKSELPVYNYVSDA--NNITWGQYMH------------LSRKGFHEPFDKALWCFSYVIIPS 417
            ...|.:.:....:|..:  |.:|:|| :|            :.|.|            |.:|:..
plant   322 AHSGDTGIQAIYHVGSSCKNPVTFGQ-LHDFTARYFAKRPLIGRNG------------SPIIVVK 373

  Fly   418 KPLHCAIAFF------LHNIPAYILDLIAMVTGQKRIYAKAYG--------KIS---RIIDMMAW 465
            ..:...:|.|      .:.:|..||.||.:|      |..::|        ||.   |::::...
plant   374 GTILSTMAQFSLYMTLRYKLPLQILRLINIV------YPWSHGDNYSDLSRKIKLAMRLVELYQP 432

  Fly   466 FGLKEWKFAHRNIDELNELLPREER-----SVLQFNIATINWSEYF-RSYLSGIRRYFFK 519
            :.|.:..|...|.:.|.  :.|:|.     ...:|:..:|:|..|. .:::.|:..:..|
plant   433 YLLFKGIFDDLNTERLR--MKRKENIKELDGSFEFDPKSIDWDNYITNTHIPGLITHVLK 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34342NP_001097509.3 PLN02996 70..519 CDD:215538 124/513 (24%)
FAR-N_SDR_e 78..397 CDD:187547 94/363 (26%)
Sterile 429..519 CDD:281068 22/106 (21%)
FAR1NP_197642.1 PLN02996 1..490 CDD:215538 124/513 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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