DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34342 and FAR8

DIOPT Version :9

Sequence 1:NP_001097509.3 Gene:CG34342 / 5740152 FlyBaseID:FBgn0085371 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_190042.2 Gene:FAR8 / 823581 AraportID:AT3G44560 Length:496 Species:Arabidopsis thaliana


Alignment Length:502 Identity:124/502 - (24%)
Similarity:211/502 - (42%) Gaps:69/502 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 FYSNATVLITGGTGFVGKVLTEKLLR-SFGLRKIYMLIRSKDNMSVQERLK-GFFNESIFNRMRE 135
            |..|.|:|:||.|||:.||..||:|| ...:.|:|:::|:.||.:..:||: ..|.:.:|..:|:
plant     8 FLQNKTILVTGATGFLAKVFVEKILRVQPNVNKLYLVVRASDNEAATKRLRTEAFEKDLFKVLRD 72

  Fly   136 E------SPQLLAKVHPIRADYSAIDLDI-DSADRAMLSSEVQIVFNVVASVKFNEKLSDAIDIN 193
            .      :..|..||.|:..|.:...|.: ||..|..:..|:.||.||.|:..|:|:....:.||
plant    73 NLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDERYDIGLGIN 137

  Fly   194 VLGTKKILDLVMEMKHLKSFVHISTLYCNCNRK--------FIKEQVYENEIGYEKIMQIYRTFD 250
            ..|...:|:...:....:..:|:||.|. |..|        |:.|::. ||.|.:..:.:.|...
plant   138 TFGALNVLNFAKKCVKAQLLLHVSTAYV-CGEKPGLLPEKPFVMEEIC-NENGLQLDINLERELM 200

  Fly   251 DETLEK-------------------MRHCLIGQMPNTYTMTKKCAENLVNHRAFHMPAGIFRPPI 296
            .:.|::                   |....:...||||..||...|.|:.:...::|..|.||.:
plant   201 KQRLKELNEQGCSEEGTTFYMKELGMERAKLHGWPNTYVFTKSMGEMLLGNHKENLPLVIIRPTM 265

  Fly   297 VMSTYKDPFPGWTDNLYGPSGLCTWSARGLVRCIYGKASCKANMVPADYVVNAMIATAWDIARRF 361
            :.||..:|||||.:.|.....:.....:|:::|.....:...:|:|||.|.|||||.|       
plant   266 ITSTLFEPFPGWIEGLRTVDSVIIAYGKGVLKCFLVDVNSVCDMIPADMVANAMIAAA------- 323

  Fly   362 KLRESKVDGKSELPVYNYVSDANN-ITWGQ-----YMHLSRKGFHEPFDKALWCFSYVIIPSKPL 420
               .:...|.....||...|...| |.:|:     :.:.::..........:......:||:..|
plant   324 ---ATHAGGSKVHMVYQVGSSHQNPIIYGEIREILFCYFTKNSLRSRNGSMITVSKMKLIPTLAL 385

  Fly   421 HCAIAFFLHNIPAYILDLIAMVTGQKRIYAKAYGKISRIIDMMAW-------FGLKEWKFAHRNI 478
            ........:.:|..:|.|:.::...:.  ...|...:|.|||:..       :.|.:..|..||.
plant   386 FSLYMTIRYKLPVQLLKLVDIIYPSRE--GDEYKNKNRKIDMVMRLVKLYEPYVLFKGIFDDRNT 448

  Fly   479 DEL-----NELLPREERSVLQFNIATINWSEY-FRSYLSGIRRYFFK 519
            ..|     .|.....|..:..|:...|.|.:| ...::.|:..:..|
plant   449 KNLCAKQKEEDNRNSENFMFDFDPKIIKWKDYLINVHIPGLITHVLK 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34342NP_001097509.3 PLN02996 70..519 CDD:215538 123/500 (25%)
FAR-N_SDR_e 78..397 CDD:187547 98/360 (27%)
Sterile 429..519 CDD:281068 20/102 (20%)
FAR8NP_190042.2 PLN02996 1..495 CDD:215538 123/500 (25%)
FAR-N_SDR_e 12..362 CDD:187547 98/361 (27%)
Sterile 394..495 CDD:281068 20/102 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

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