DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34342 and FAR4

DIOPT Version :9

Sequence 1:NP_001097509.3 Gene:CG34342 / 5740152 FlyBaseID:FBgn0085371 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_190040.3 Gene:FAR4 / 823579 AraportID:AT3G44540 Length:493 Species:Arabidopsis thaliana


Alignment Length:501 Identity:120/501 - (23%)
Similarity:229/501 - (45%) Gaps:70/501 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 FYSNATVLITGGTGFVGKVLTEKLLR-SFGLRKIYMLIRSKDNMSVQERLKG-FFNESIF----N 131
            |..:.|:|:||..||:.||..||:|| ...::|:::|:|:.||.|..:|... ...:.:|    |
plant     8 FLHDKTILVTGVPGFLAKVFVEKILRIQPKVKKLFLLLRAADNESAMQRFHSEVLEKDLFRVLKN 72

  Fly   132 RMREESPQ--LLAKVHPIRADYSAIDLDIDSADRAM-LSSEVQIVFNVVASVKFNEKLSDAIDIN 193
            .:.:|:.:  :..||.||..|.|..:|.:..:|... :.:|:.|:.||.|:..|:|:....:.:|
plant    73 ALGDENLKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFDERYDVGLSVN 137

  Fly   194 VLGTKKILDLVMEMKHLKSFVHISTLY-------------------CNCNRKFIKEQVYENEIGY 239
            ..|...:|:...:....:..:|:||.|                   .|.:||.:.|.  |.|:..
plant   138 TFGPLNVLNFAKKCVKGQLLLHVSTAYVRGEKSGLLHEKTFHMGETLNGHRKLVIET--EMELMK 200

  Fly   240 EKIMQIYR--TFDDETLEKMR-----HCLIGQMPNTYTMTKKCAENLVNHRAFHMPAGIFRPPIV 297
            :|:.::.:  ..::|..:.|:     ...:...||||..||...|.|:.:...::|..|.||.::
plant   201 QKLKELQKQNCSEEEISQSMKDLGMSRAKLHGWPNTYVFTKSMGEMLLGNYRENLPIVIIRPTMI 265

  Fly   298 MSTYKDPFPGWTDNLYGPSGLCTWSARGLVRCIYGKASCKANMVPADYVVNAMIATAWDIARRFK 362
            .||:.:|||||.:.|.....:.....:|.::|.....:...:::|.|.|.|||:..|       .
plant   266 TSTFSEPFPGWIEGLRTIDSVIVAYGKGRLKCFLADPNSVLDLIPVDMVANAMVTAA-------A 323

  Fly   363 LRESKVDGKSELPVYNYVSDANN-ITWGQYMHLSRKGF-HEPFDKALWCFSYVIIPSKPLHCAIA 425
            :...|:..::   ||:..|...| ||:.|...|:...| ..|..:.  ..|.:::....:...:|
plant   324 IHAGKLGSQT---VYHVGSSCKNPITFEQIHDLAASYFTKNPLVRR--DGSSILVSKGTILSTMA 383

  Fly   426 ---FFL---HNIPAYILDLIAMV----TGQKRIYAKAYGKIS---RIIDMMAWFGLKEWKFAHRN 477
               |::   :.:|..:|.||.::    .|.|  |.....||.   |::|:...:.|.:..|...|
plant   384 QFSFYMTLRYKLPLQMLRLIYVIYPWWNGNK--YKDIDRKIKLAMRLVDLYRPYVLFKGIFDDTN 446

  Fly   478 IDEL---NELLPREERSVLQFNIATINWSEYFRS-YLSGIRRYFFK 519
            .::|   .:.:.:|...:.:|:..:|:|.:|..: ::.|:..|..|
plant   447 TEKLRLKRKEINKEMYGLFEFDPKSIDWEDYMTTIHIPGLITYVLK 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34342NP_001097509.3 PLN02996 70..519 CDD:215538 119/499 (24%)
FAR-N_SDR_e 78..397 CDD:187547 91/354 (26%)
Sterile 429..519 CDD:281068 22/100 (22%)
FAR4NP_190040.3 PLN02996 1..492 CDD:215538 119/499 (24%)
FAR-N_SDR_e 12..362 CDD:187547 92/361 (25%)
Sterile 393..492 CDD:281068 22/100 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815047at2759
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

Return to query results.
Submit another query.