DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34342 and CG12268

DIOPT Version :9

Sequence 1:NP_001097509.3 Gene:CG34342 / 5740152 FlyBaseID:FBgn0085371 Length:572 Species:Drosophila melanogaster
Sequence 2:NP_001247272.1 Gene:CG12268 / 42833 FlyBaseID:FBgn0039131 Length:531 Species:Drosophila melanogaster


Alignment Length:495 Identity:159/495 - (32%)
Similarity:266/495 - (53%) Gaps:9/495 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 VTDFYSNATVLITGGTGFVGKVLTEKLLRSFG-LRKIYMLIRSKDNMSVQERLKGFFNESIFNRM 133
            :..||:|.|:||||.|||:||||.||||||.. |..||:|||:|..:....|.:.:|...||.::
  Fly    15 IAKFYANKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCVIFGKL 79

  Fly   134 REESPQLLAKVHPIRADYSAIDLDIDSADRAMLSSEVQIVFNVVASVKFNEKLSDAIDINVLGTK 198
            .|::|.::.||..::.|....||.:.:.|...|:|.|::||:..|:|:|::.|...:.:||:||.
  Fly    80 LEKNPGIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMMNVVGTL 144

  Fly   199 KILDLVMEMKHLKSFVHISTLYCNCNRKFIKEQVYENEIGYEKIMQIYRTFDDETLEKMRHCLIG 263
            |:|.|..:|..|::.||:||.||.||...::|:.|........|:::..|.|||.|.::...|:.
  Fly   145 KVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDEALAEITPKLLN 209

  Fly   264 QMPNTYTMTKKCAENLVNHRAFHMPAGIFRPPIVMSTYKDPFPGWTDNLYGPSGLCTWSARGLVR 328
            .:||||..:|..:|:|:......:|..|.||.||.:...:|.|||.:.:.||:||...:|||::|
  Fly   210 GLPNTYAYSKALSEDLICRYNNKLPIIITRPSIVTAAIHEPLPGWIEGVNGPTGLMIGAARGVIR 274

  Fly   329 CIYGKASCKANMVPADYVVNAMIATAWDIARRFKLRESKVDGKSELPVYNY-VSDANNITWGQYM 392
            .::......:.::|.|..:|.||...:   :|.|..:.|.:.::.:...|. :|....::||..:
  Fly   275 SMHCNPDYASTVIPVDKAINGMILCGY---QRGKASQEKGNKQTGVEFCNLCISSKALMSWGDSI 336

  Fly   393 HLSRKGFHE-PFDKALWCFSYVIIPSKPLHCAIAFFLHNIPAYILDLIAMVTGQKRIYAKAYGKI 456
            ...|:.|:| |...|||.....|..:...|.....|.|.:|||.:|...:|.|||........|:
  Fly   337 ETGRRFFYETPLSFALWYPGGSIKKNYYHHLFCVIFFHYLPAYFIDFWLLVFGQKPFLLNVQRKV 401

  Fly   457 SRIIDMMAWFGLKEWKFAHRNIDELNELLPREERSVLQFNIATINWSEYFRSYLSGIRRYFFKDS 521
            |..:.::.::..|.|:|.:....|::..|...::.:...::..:||..|..:|:.|:|.|...:|
  Fly   402 SMGLKLLQYYTTKRWEFRNERFQEMSSQLSLLDQDLFDTSVGQVNWETYISNYIVGMRTYILGES 466

  Fly   522 ANDNKLQQRRTIYRRMLILHTLLKTTFGLSLIMCMLRVYL 561
              ::.|.|.|.:.||:.||..:.|..| .||....|..:|
  Fly   467 --EDTLPQARKVLRRLYILDWVSKVLF-FSLSFWFLWTHL 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34342NP_001097509.3 PLN02996 70..519 CDD:215538 145/451 (32%)
FAR-N_SDR_e 78..397 CDD:187547 109/320 (34%)
Sterile 429..519 CDD:281068 23/89 (26%)
CG12268NP_001247272.1 PLN02996 12..463 CDD:215538 145/450 (32%)
FAR-N_SDR_e 22..347 CDD:187547 112/327 (34%)
FAR_C 372..463 CDD:176924 24/90 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466767
Domainoid 1 1.000 159 1.000 Domainoid score I1277
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 182 1.000 Inparanoid score I1437
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 1 1.000 - - mtm964
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
99.000

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