DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34342 and far1

DIOPT Version :9

Sequence 1:NP_001097509.3 Gene:CG34342 / 5740152 FlyBaseID:FBgn0085371 Length:572 Species:Drosophila melanogaster
Sequence 2:XP_005174372.1 Gene:far1 / 406829 ZFINID:ZDB-GENE-040426-2908 Length:518 Species:Danio rerio


Alignment Length:506 Identity:155/506 - (30%)
Similarity:265/506 - (52%) Gaps:37/506 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 VTDFYSNATVLITGGTGFVGKVLTEKLLRSF-GLRKIYMLIRSKDNMSVQERLKGFFNESIFNRM 133
            :.::|....|||||.|||:||||.||||||. |::..|:|:|.|...:...|:....|..:|:|:
Zfish     4 IPEYYVGKNVLITGATGFMGKVLLEKLLRSCPGVKAAYVLVRPKAGQAPDARIADMINCKLFDRL 68

  Fly   134 REESPQLLAKVHPIRADYSAIDLDIDSADRAMLSSEVQIVFNVVASVKFNEKLSDAIDINVLGTK 198
            ||:.|....|:..|.:|.:..:||:.:.|:..|:..:.:||:..|:::|||.|.||:.:|||.|:
Zfish    69 REDQPDFAGKIVAINSDLTQPNLDLSAEDQETLTGCINVVFHCAATIRFNEPLKDAMQLNVLATQ 133

  Fly   199 KILDLVMEMKHLKSFVHISTLYCNCNRKFIKEQVYENEIGYEKIMQIYRTFDDETLEKMRHCLIG 263
            |::.|...||||:.|:|:||.|.||:|:.|:|.||...:.|.|::......||:.:..|...|:|
Zfish   134 KMVSLAHRMKHLEVFIHVSTAYANCDRELIEEVVYPPPVDYRKLIDTLEWMDDKLVSLMTPRLLG 198

  Fly   264 QMPNTYTMTKKCAENLVNHRAFHMPAGIFRPPIVMSTYKDPFPGWTDNLYGPSGLCTWSARGLVR 328
            :.|||||.||..||.||.....::...|.||.||.:::|:|||||.||..||||:...:.:|::|
Zfish   199 ERPNTYTYTKALAEQLVQQECGNLNIAIIRPSIVGASWKEPFPGWIDNFNGPSGIFIAAGKGILR 263

  Fly   329 CIYGKASCKANMVPADYVVNAMIATAWDIARRFKLRESKVDGKSELPVYNYVSDA-NNITWGQY- 391
            .:....:..|::||.|.|:|..:|.||....:...|      ...|.|||..:.. |...||:. 
Zfish   264 TMRASNNAVADLVPVDVVINTTLAAAWYSGSQRHAR------PRSLLVYNCTTGGINPFHWGEVE 322

  Fly   392 MHLSRKGFHEPFDKALWCFSYVIIPSKPLHCAIAFFL---HNIPAYILDLIAMVTGQKRIYAKAY 453
            .|:.......|.::|   |....:.....|....:::   |..||::.||...::|::....|..
Zfish   323 YHVISTFKRNPLEQA---FRRPNVNLTTNHLINQYWIAVSHKAPAFLYDLFLRMSGREPRMMKTI 384

  Fly   454 GKISRIIDMMAWFGLKEWKFAHRNIDELNELLPREERSVLQFNIATINWSEYFRSYLSGIRRYFF 518
            .::.:.:.::.:|....|.:...|:..|...:..|::.|..|::..::|:||..:|..|.::|..
Zfish   385 TRLHKAMMVLEYFTSHSWVWNTDNVTMLMNQMGAEDKKVFNFDVRQLHWAEYMENYCMGTKKYVL 449

  Fly   519 KDSAND--------NKLQQRRTIYRRMLILHTLLKTTFGLSLIMCMLRVYL 561
            .:..:.        |||:.              ::.||...|::.:.|:::
Zfish   450 NEELSGLPAARKHLNKLRN--------------IRYTFNTVLVVLIWRIFI 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34342NP_001097509.3 PLN02996 70..519 CDD:215538 148/454 (33%)
FAR-N_SDR_e 78..397 CDD:187547 123/321 (38%)
Sterile 429..519 CDD:281068 20/89 (22%)
far1XP_005174372.1 FAR-N_SDR_e 11..333 CDD:187547 123/327 (38%)
Sterile 360..450 CDD:308580 20/89 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593273
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D221518at33208
OrthoFinder 1 1.000 - - FOG0000172
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11011
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X145
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.950

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