DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kmr and Pdzph1

DIOPT Version :9

Sequence 1:NP_001097775.2 Gene:kmr / 5740131 FlyBaseID:FBgn0085412 Length:3090 Species:Drosophila melanogaster
Sequence 2:NP_081277.1 Gene:Pdzph1 / 69239 MGIID:1916489 Length:1238 Species:Mus musculus


Alignment Length:1201 Identity:220/1201 - (18%)
Similarity:391/1201 - (32%) Gaps:368/1201 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1129 DDNLYSATAGRSSSS----------------KTTTKATTSQAIVATTTAALAITNLGSSKNLETP 1177
            |:|:.::..|:.:||                |:.....|..||.......|.:. :.:.:....|
Mouse    50 DENITASINGKQNSSFLVKNEKQAPSDSTIHKSMENGYTPPAISPQLEEVLPVA-MFNDREKSLP 113

  Fly  1178 NQTETEATPSSSSTASSTKAKF--QLK-PILKVH-EASKTRIIQVQPKHLEERPKLRLQLPKAMG 1238
            .:..||..|::.......|.||  ::| ....|| |.:|:...:...::|.:|     :.|..  
Mouse   114 GKITTEDFPNTVEVLKPAKGKFIREVKCGAFNVHVETTKSIFCKTGAQNLTKR-----RCPTC-- 171

  Fly  1239 NEEEQKQEDEEQENVEAEPVPILPKKTAPKSPQNANYVPVYNNKLVSNYENMEFGKPIPESKIPH 1303
                       .::...:.|....|.....|.........:..::.|.|.     :.:..|::|.
Mouse   172 -----------HQHYSVQQVWRGSKSRGHFSKHRTVLAEEFKRRVPSTYR-----RGVSRSEVPS 220

  Fly  1304 SNAAITDPEETPMLMQLKLFKEQQDQQKQQQENEEEDLTPTAESKPIPGEEDMGAPKVIKDQKLE 1368
            .|.:|...|    :|...:.|:|.........|....||          :...|..|...|:..|
Mouse   221 VNISIVGKE----IMVEYISKKQNTFINICHPNSIGKLT----------KHRRGPLKHTTDEPCE 271

  Fly  1369 S-------NEEEQELEDEDDSTACEEYTDDDIDEALAQDDEDEAVVEAVESQELAEERELQQIYV 1426
            |       :.|.|.||::..|:  :.:.|........|.:..:.:|.::.|              
Mouse   272 SASQPGINHPENQRLENQHQSS--DAFHDAPCSVNAVQKENSDTIVVSLSS-------------- 320

  Fly  1427 NEPITPTDQQFDESHYLPMTPKKVELGQPGVLTLVSATYAEEEEENHYVEMTKGIQDEDCRSNYE 1491
                 |..::.::.:.||..|...|.|:                                     
Mouse   321 -----PPRREKEKPNTLPSAPDDSEEGE------------------------------------- 343

  Fly  1492 IMCLASTSSSAFKVTTKTEPVYMELAGVKASSAVPATEEAHCSSGRSTLKKCKKSGTETLKKKTK 1556
                ::||.......|:.:|:                 |.||    .|...|..:.:|||  :|.
Mouse   344 ----SATSPQKVLQITQDKPL-----------------EQHC----FTADSCLPTSSETL--RTT 381

  Fly  1557 KRQGKDMPDILKPAKSALALASDSSDADDESSRQQLEAKKLRSRSRFSLSDTFRPASYYLGASTP 1621
            .....|:        |.::| .||.|.|:|        :|..|..|.:::...:......|.:.|
Mouse   382 SLNNVDL--------SKMSL-EDSRDVDEE--------RKNSSDVRENITPDSQVQPCTAGTNGP 429

  Fly  1622 LNNYAESSDSEILPPPPIPASPPPMEELKTEEIFSSEHYDTVK----RKDSNGKVNLSYEQLP-K 1681
            |     |:.:.|:          |:::....| ||...:.|::    :.|:.|  ....|.|| :
Mouse   430 L-----SAVNSII----------PIQDASGSE-FSPLSFLTLQLLGAKADNMG--CRGEETLPGE 476

  Fly  1682 MHASNTSLNLP----KAVPSPTL----KSSRLSLPDHFTKVRMTPQRLLVPATPPQQHHARTLSD 1738
            .|.|:.||..|    .|.|||.|    :.||.|.|...|....:..:.:......::.|.|.::.
Mouse   477 GHESSNSLLFPVSEQAAKPSPLLSPSHRVSRCSEPVETTGNTFSFSQYIGVEREQEKVHYRLINK 541

  Fly  1739 SNYSCQLTDTSSRTSSDLDLYRRRGQQQRCTSNNSL-------PLSSE-NESVEFRQRSDSELDR 1795
            ::       ..:.:||::....|:..|....:..|.       ||... :.|||:.|..|..  .
Mouse   542 AS-------LHNDSSSNIQPLERKDPQSPAVTIASCSILVPKSPLHGNIHSSVEWNQTEDHA--N 597

  Fly  1796 QRSRRPLSQESISEIESLSEQFEETLSS-------------------HELDTYLSHLHLSTGQAT 1841
            ...|..||:..:..:.|::.:.|::|::                   .|..:||.::.....||.
Mouse   598 HAERAGLSRMEVPVMASITNELEQSLATQNYKESTVDSNSPMAIRNPRESTSYLENVGDDASQAL 662

  Fly  1842 PTSHLLNDANAAAGADILTNLIKPPKTFRNAED---EEQHFYGNIHFLSSTDSIQQLGEAGATAL 1903
            |               ::.|:     ..||.||   |.|:     ...|..|.:|...|:.:.. 
Mouse   663 P---------------VVKNM-----CHRNFEDLTRENQN-----EICSQMDFLQNSSESTSVG- 701

  Fly  1904 RIIHSRNNSNISTQSAPYYYSELPAPPPLNNQRDIHAHGLNIAHIHNPIDRHQFNVDALVDKDQA 1968
               |       :|:........|.:....|:.||....|||             |......:.|.
Mouse   702 ---H-------TTEKLFLIDKTLASDDDSNSNRDHKTCGLN-------------NFQQEPAECQR 743

  Fly  1969 IDSKNIYCGQKDN--------------------NEKLSNKNLKLNKSVDLPAE--MEGSGSSGGA 2011
            ..|: :||.:..|                    .:.|.::||::|....|..|  :.|..:|.|:
Mouse   744 TTSR-VYCEESGNQRYPTEVSCHPVDILLSPQKQKALKDQNLEINNPRKLSQELALRGGRASDGS 807

  Fly  2012 LNPVVHSYLTTTKNTNLARK--TIGGSN----------PSDDGNPNEDGAGENTEEAGKTPSNNV 2064
            ....:..:....:.....::  :.|||:          .|||.:..:.|...:.||.| ..:.|.
Mouse   808 QEEAIEQWARRRQQFKDGKRCSSAGGSSVISNFTEGSITSDDVHSVDFGFRVDIEEKG-FYTENF 871

  Fly  2065 HTNLSVLGGELLWEEDALWRESLRRVSQRHARSLDDLDRITAAPPISSTPKAKLSREVTYVNDSL 2129
            |:...|..|     :|....:|.|.:|::                    |:....||.| |....
Mouse   872 HSTAWVFRG-----DDGNPEDSPRCLSKK--------------------PRPVAVRERT-VRLFK 910

  Fly  2130 KPRQHP---HITNEHDVYVQLMDTTSSSHDHDQTDSDVY------EVLREETAS--NLSHK---- 2179
            ....:|   .|.....:.|..:||.|::.:......||.      ||...|.|.  :|:.|    
Mouse   911 GTGDYPWGFRIQFSKPIVVTEVDTNSAAEEAGLQIGDVVLSVNGTEVTSVEHAEAVHLAKKGLDI 975

  Fly  2180 -----SNELDRETIRQWDAMSSGLMKSNHSG 2205
                 ::::.|.....|......|.|..|||
Mouse   976 LTMVVASDISRCPNTPWPTCRGYLHKRTHSG 1006

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kmrNP_001097775.2 PH_PEPP1_2_3 366..469 CDD:270068
PH 372..469 CDD:278594
Pdzph1NP_081277.1 PDZ_signaling 903..981 CDD:238492 17/78 (22%)
PH-like 986..1093 CDD:302622 7/21 (33%)
PH 993..1094 CDD:278594 5/14 (36%)
PH-like 1123..1215 CDD:302622
PH 1125..1216 CDD:278594
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2051
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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