DRSC/TRiP Functional Genomics Resources

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Protein Alignment kmr and pdzph1

DIOPT Version :9

Sequence 1:NP_001097775.2 Gene:kmr / 5740131 FlyBaseID:FBgn0085412 Length:3090 Species:Drosophila melanogaster
Sequence 2:XP_700271.6 Gene:pdzph1 / 571576 ZFINID:ZDB-GENE-090313-385 Length:1215 Species:Danio rerio


Alignment Length:604 Identity:108/604 - (17%)
Similarity:197/604 - (32%) Gaps:206/604 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 SQALYQQSPTATSSSGGGPLSPIDMQPQSKHYNLMKHGGGTSSSSHS--------SPYHQSY--- 92
            |.:.|:  |:::|::|     |....|:.:.|:.:|:....|.|..|        ..||:..   
Zfish   498 SSSSYR--PSSSSTTG-----PDSFGPKCRAYSTIKNPFYPSRSDESPEEVFFRGEQYHEQEHLD 555

  Fly    93 -------------------SSSGGTAAGEQLYQSPTERTYLAAAGRLHANNAMAGHHPISALQSQ 138
                               |:|||.....::.:|..:...:.....:.|.|.|..|.        
Zfish   556 EMVEPSLEADVGMMFADLDSTSGGHTELNEVSESGFDEEMVELDESISAGNTMDSHQ-------- 612

  Fly   139 YQQLQAAKMQAQMATQSEAAQQQQRTFALRQAMNPPTNHYHMSQSSSMV---STMTALNQQQQQQ 200
             ::|....:...::...|...:     .:..::.|  |.:...::..::   |.||.:....:|:
Zfish   613 -RELLIHVIPPSLSNSEEKINE-----GIHYSLKP--NTFEEDETEGLMRRASVMTIITGDNEQR 669

  Fly   201 QQQ-------QQQQQQQQRAP----PSSLNLQNQYQPAQGPLKLQQQQQ-------QQQQQSQQP 247
            ..|       ..:......:|    |:...:::.....:|..:||...|       |....||.|
Zfish   670 FLQGNYVFSLDGEVSPDALSPVSESPTGSPIEDLGSIREGVEELQDSSQAPKTTTVQMNMSSQSP 734

  Fly   248 ------------AMPKHYQEQL----YAQQQQLQ---------QQLHQQQQ-------QQQQLQQ 280
                        ..||.|:..|    .|.:..|:         ..:|:..:       ::::|.:
Zfish   735 NATLDKISRDVCRTPKVYKNDLSERPNASKNTLEVKEHLKPPTDSIHKDSEDHSDHWAKRRKLFK 799

  Fly   281 QQQQHRH----------KNDLQTPGSE-----------------------------HGTVYIQQN 306
            :.:|...          ..:..|..||                             ||....|.:
Zfish   800 ESKQRSSAGGNSISSNITEESDTMNSEDTRSVDMSMRDIEDRGFYTETFHSVSWIYHGAEVTQND 864

  Fly   307 HPNHVVNQACQT---------------------QISAVKPKAT-------PSSEE---------- 333
            .| |.:....:.                     :|...||...       |:.|.          
Zfish   865 SP-HCLRSCARPAAIRERTVKICKGVGEYPWGFRIQFSKPIVVTEVDTNGPAEEAGLQVGDFVQA 928

  Fly   334 -SSSNSTKSPSHAPLDRKKSAGSIQAL-------KSPITKRPPSTPVTLSGWLHKQ-GSDGLKVW 389
             :.::.|..|.....|..:....:..|       ::|.|.||     ...|:|||: .|..||.|
Zfish   929 VNGTDVTSVPHSEAADLARQGPDLLTLTIGSDIGRTPNTPRP-----ACRGYLHKRTQSSFLKGW 988

  Fly   390 RKRWFVLA-EYCLYYYKGPEEE---KLLGSVLLPSYRVSACLPEDKIYRKFAFK-CEHQNMRTYW 449
            |||||||. :.|||||:...:|   :.|..:.|....|.|   :..:.:.|.|: |.....|.|:
Zfish   989 RKRWFVLRHDCCLYYYRNKRDEGKSRALSVMSLEGALVEA---DSTLGKPFVFRCCPVSGNRAYY 1050

  Fly   450 LAADNSEAMMQWVRALAAA 468
            |.|.:::.|.:|:.|:..|
Zfish  1051 LCATSNQEMKRWLEAMGRA 1069

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kmrNP_001097775.2 PH_PEPP1_2_3 366..469 CDD:270068 38/109 (35%)
PH 372..469 CDD:278594 36/103 (35%)
pdzph1XP_700271.6 PDZ_signaling 880..957 CDD:238492 9/76 (12%)
PH-like 963..1069 CDD:302622 39/113 (35%)
PH 972..1071 CDD:278594 36/101 (36%)
PH 1102..1192 CDD:278594
PH 1102..1192 CDD:214574
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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