DRSC/TRiP Functional Genomics Resources

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Protein Alignment kmr and Arhgap22

DIOPT Version :9

Sequence 1:NP_001097775.2 Gene:kmr / 5740131 FlyBaseID:FBgn0085412 Length:3090 Species:Drosophila melanogaster
Sequence 2:XP_038950392.1 Gene:Arhgap22 / 306279 RGDID:1307237 Length:722 Species:Rattus norvegicus


Alignment Length:637 Identity:133/637 - (20%)
Similarity:214/637 - (33%) Gaps:160/637 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   349 RKKSAGSIQALKSPITKRPPST--PVTLSGWLHKQGSDGLKVWRKRWFVLAEYCLYYYKGPEEEK 411
            |.||....:..:||.....|..  ||..:|||.||.|. :|.|::|||||....|:|||..:|.|
  Rat    19 RSKSLVMGEQSRSPGRPLAPHKLGPVLKAGWLRKQKSI-MKNWQQRWFVLRGDQLFYYKDKDEGK 82

  Fly   412 LLGSVLLPSYRVSACLPEDKIYRKFAFK------CEHQ----NMRTYWLAADNSEAMMQWVRALA 466
            ..|.:.|...:|:..||:.....|..|:      .|.:    |.....|.|.:...|..||:|: 
  Rat    83 PQGFISLQGTQVTELLPDPDDPGKHLFEITPGGAAEREKVPANPEALLLMASSQRDMEDWVQAI- 146

  Fly   467 AASLMQAPSSGESEPSVNS------SLNHSGENSDSGIHTLQSHPGKGQPTPSS----------E 515
             ..::.||..|.:..|.::      |....|:..:..:|    |..|..|..:.          .
  Rat   147 -RRVIWAPLGGGTSRSSHAHPVEPLSTGIFGQRLEDTVH----HERKFGPRLAPLLVEQCVDFIR 206

  Fly   516 NTGSSGGGSGSGQPLYANAPPKPRRINDGGYSSPSPEHNEQQQQHPSRRLMSPTQQLYQQQQHQR 580
            ..|.|..|. ...|..||.   .|.:.|.......|..:.....|....|:    :||       
  Rat   207 ERGLSEEGL-FRMPGQANL---VRDLQDSFDCGEKPLFDSTTDVHTVASLL----KLY------- 256

  Fly   581 SQQQQQQQPQQHHAIY------------DTRTGHVSTALQLQQ-AQQQYS--------LDHLEAQ 624
              .::..:|....|.|            |...|.|..|.|:.. .|..|:        ||.::|.
  Rat   257 --LRELPEPVIPFARYEDFLSCAQLLTKDEGEGTVELAKQVSNLPQANYNLLRYICRFLDEVQAH 319

  Fly   625 FQQQQLDMEE-------QIARLQQQRAAEEIYG--------------EREMYMAKLMQQRQGPNG 668
            ....::.::.       .|.|.|.:.....:.|              ..:::.....::...|.|
  Rat   320 SDVNKMSVQNLATVFGPNILRPQVEDPVTIMEGTSLVQHLMTVLIRKHGQLFATPSFEEPASPRG 384

  Fly   669 TYP-----TQQQLLQAERRTPDAYG--RSKQQRLFAAAAAAADYEDIYNMSQLAGGGGV-PMSAQ 725
            |..     ..:::.:..:..|.:.|  ..:...|...|||.........:...||.... |....
  Rat   385 TVQGTVEWGSEEVTRDHQGEPGSSGLPTHRTSSLDGPAAAVLSRTSPPRLGSQAGPAATSPGKRM 449

  Fly   726 EALLQEAASYR----RPLSPPSYDGSKHVPAMPQ---------RYTPNHLEASAADQLINTMDLR 777
            ..|....:|:|    |..||.....|..||.:..         ....:|..||:.|:|.:|...:
  Rat   450 HTLPGWKSSFRQQGSRSESPKGVSSSLEVPIISSGGNWLINGLSSLRSHRRASSGDRLKDTGSAQ 514

  Fly   778 ARTAAAIVRPHSADFLEYEARAEAAAAAAAAAVAQSQQESG-------RA--------------- 820
            ..:....|.|.|      ...:.|:.|:.|.:||.|.:|:.       ||               
  Rat   515 RLSTYDNVPPSS------HLSSTASVASTAWSVASSSREASIGSCTACRASNSSACSSLHTEWAL 573

  Fly   821 ---PRPKSSLDINRTPDSFYYSEASYADKMRKSALYLQSGGAGAAQPQQPGS 869
               |.|.|| :.:.:||..:..:.:..             |:|:::|..|||
  Rat   574 EPSPLPSSS-EGHPSPDLGHSLDEACV-------------GSGSSEPNDPGS 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kmrNP_001097775.2 PH_PEPP1_2_3 366..469 CDD:270068 37/114 (32%)
PH 372..469 CDD:278594 35/106 (33%)
Arhgap22XP_038950392.1 PH-like 42..157 CDD:418428 38/117 (32%)
RhoGAP_ARHGAP22_24_25 173..371 CDD:239855 35/218 (16%)
SMC_prok_B <614..>704 CDD:274008
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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