DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kmr and Arhgap24

DIOPT Version :9

Sequence 1:NP_001097775.2 Gene:kmr / 5740131 FlyBaseID:FBgn0085412 Length:3090 Species:Drosophila melanogaster
Sequence 2:XP_038947750.1 Gene:Arhgap24 / 305156 RGDID:1306669 Length:815 Species:Rattus norvegicus


Alignment Length:841 Identity:165/841 - (19%)
Similarity:268/841 - (31%) Gaps:306/841 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 ESSSNSTKSPSHAPLDRKKSAGSIQALKSPITKRPPSTPVTLSGWLHKQGSDGLKVWRKRWFVLA 397
            |.:.:||::|        .|.|...|.|              .|||.|||. .:|.|..|||||.
  Rat    69 EENCDSTENP--------HSQGRQNATK--------------CGWLRKQGG-FVKTWHTRWFVLK 110

  Fly   398 EYCLYYYKGPEEEKLLGSVLLPSYRVSACLPEDKIYRKFAFKC----EHQNM----RTYWLAADN 454
            ...|:|:|..:|.|.||::.||..:|......::...||.|:.    |...|    .:|.|.|..
  Rat   111 GDQLHYFKDEDETKPLGTIFLPGNKVIEHPCNEESPGKFLFEVVPGGERDRMTANHESYLLMAST 175

  Fly   455 SEAMMQWVRALAAASLMQAPSSG-----ESEPSVNSSLNHSGENS-----------------DSG 497
            ...|..||:::  ..::..|..|     :.|.:|.....:....:                 :.|
  Rat   176 QNDMEDWVKSI--RRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEG 238

  Fly   498 IHTLQSHPGKGQPTPSSENTGSSGGGSGSGQPLYANAPPKPRRINDGGYSSPSPEHNEQQQQHPS 562
            :..|   ||:                        ||.   .:.:.|.......|..:.....|..
  Rat   239 LFRL---PGQ------------------------ANL---VKELQDAFDCGEKPSFDSNTDVHTV 273

  Fly   563 RRLMSPTQQLYQQQQHQRSQQQQQQQPQQHHAIYDTRTGHVSTALQLQQAQQQYSLDHLEAQFQQ 627
            ..|:    :||         .::..:|...:|.|:   ..:|.|..|.: :::..:..|..|.:.
  Rat   274 ASLL----KLY---------LRELPEPVVPYAKYE---DFLSCATLLSK-EEEAGVKELTKQVKS 321

  Fly   628 QQL---DMEEQIARLQQQRAAEEIYGEREMYMAKLMQQRQGPN--------------GTYPTQQQ 675
            ..:   ::.:.|.|...:  .:...|..:| .|:.:....|||              ||...||.
  Rat   322 LPVVNYNLLKYICRFLDE--VQSYSGVNKM-SAQNLATVFGPNILRPKVEDPLTIMEGTVVVQQL 383

  Fly   676 LLQAERRTPDAYGRSKQQRLFAAAAAAADYEDIYNMSQLAGGGGVPMSAQEALLQEAASYRRPLS 740
            :         :...||..|||     ..|.|              |.|             :|..
  Rat   384 M---------SVMISKHDRLF-----PKDTE--------------PQS-------------KPQE 407

  Fly   741 PP---SYDGSKHVPAMPQRYTPNHLEASAADQLINTMDLRARTAAAIVRPHSADFLEYEARAEAA 802
            .|   :.||.|.|               ...||.|..:  ..|..:.||..|.|..|...|: :.
  Rat   408 GPNSNNNDGHKKV---------------TMGQLQNKEN--NNTKESPVRRCSWDKPESPQRS-SM 454

  Fly   803 AAAAAAAVAQSQQESGRAPRPKSS---LDINRTP-------------------DSFYYSEASYAD 845
            ...:..|::.|:..|     |::|   ||::|:|                   .||..|.|...:
  Rat   455 DNGSPTALSGSKTNS-----PRNSIHKLDVSRSPPLTVKKNPAFNKGSGIVTNGSFSSSNAEGVE 514

  Fly   846 K----------MRKSALYLQSGGAGAAQPQQPGSYR-------TTGADFN--------SGVNTI- 884
            |          .|:::....||........|.|:.|       |.|...|        :|..|: 
  Rat   515 KTQTTPNGSLQARRTSSLKSSGTKMGTHSVQNGTVRMGILNTDTLGNSLNGRSMSWLPNGYVTLR 579

  Fly   885 -----------GYEN---PYERAYKRQELL--------AEAQGGGAS---SMPRMSRSASQGRSV 924
                       |..|   .|:..:::..|:        ..|....:|   |:|..|.|.....:.
  Rat   580 DNKQKEPAGESGQHNRLSTYDNVHQQFSLMNLDDKHSVDSATWSTSSCEISLPENSNSCRSSTTT 644

  Fly   925 ASQ------------LQSPQQEDLPPLNVHPGSIFPPSMSTQEIISKNEQFLRSASARLPKRSGG 977
            ..:            |..|.|:||.    |||..            :|:...||...|..:.:..
  Rat   645 CPEQDFYGGNFEDPVLDGPPQDDLS----HPGDY------------ENKSDRRSVGGRSSRATSS 693

  Fly   978 MDDDYSAGNSTTTSPTGGAGASNSPQHNLDGERKREESMKRLLEWKQRMLQSPLTRKGIQQ 1038
            .|      ||.|.  .|...:::|..|:|....| :|..|:.:|::.|:       |.::|
  Rat   694 SD------NSETF--VGNTSSNHSALHSLVSSLK-QEMTKQKIEYESRI-------KSLEQ 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kmrNP_001097775.2 PH_PEPP1_2_3 366..469 CDD:270068 34/110 (31%)
PH 372..469 CDD:278594 34/104 (33%)
Arhgap24XP_038947750.1 PH_RhoGap24 84..197 CDD:241530 37/129 (29%)
RhoGAP_ARHGAP22_24_25 197..395 CDD:239855 37/256 (14%)
Smc <716..>802 CDD:224117 7/31 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.