DRSC/TRiP Functional Genomics Resources

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Protein Alignment kmr and Farp2

DIOPT Version :9

Sequence 1:NP_001097775.2 Gene:kmr / 5740131 FlyBaseID:FBgn0085412 Length:3090 Species:Drosophila melanogaster
Sequence 2:NP_663494.2 Gene:Farp2 / 227377 MGIID:2385126 Length:1065 Species:Mus musculus


Alignment Length:627 Identity:114/627 - (18%)
Similarity:205/627 - (32%) Gaps:232/627 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 QSPTATSSSGGGP-LSPI---------DMQPQSKHYNLMKHGGGTSSSSHSSPYHQSYSSSGGTA 99
            |:..:|:..|..| |||:         |.|.:.||    ||          .|..::|..:....
Mouse   497 QAALSTAEQGASPVLSPVLSGAGTARMDNQEEQKH----KH----------MPEDEAYFIAKEIL 547

  Fly   100 AGEQLYQSPTERTYL---------------------AA----------------AGRLH------ 121
            |        ||||||                     ||                .|.||      
Mouse   548 A--------TERTYLKDLEVITVWFRSVLIKEEAMPAALMALLFSNIDPVYEFHRGFLHEVEQRL 604

  Fly   122 ------ANNAMAGHH------------PISALQSQYQQLQAAKMQAQMATQS----EAAQQQQRT 164
                  ::..:.|.|            .:....|.:|:......:.:.||:.    ||..::   
Mouse   605 ALWEGPSSAHLKGDHQRIGDILLRNMRQLKEFTSYFQRHDEVLTELEKATKHCKKLEAVYKE--- 666

  Fly   165 FALRQAMNPPTN-----------HYHM----------------SQSSSMVSTMTALNQQQQQQQQ 202
            |.|::....|.|           ||.:                :.....:..:|.:..:.||...
Mouse   667 FELQKVCYLPLNTFLLKPVQRLVHYRLLLSRLCAHYSPGHRDYADCHEALKAITEVTTELQQSLT 731

  Fly   203 QQQQQQQQQRAPPSSLNLQNQYQPA-----QGPL-KLQQQQQQQQQ----------QSQQPAMPK 251
            :.:..|:........:.::|...|.     :|.| ||.::..||:.          .|:......
Mouse   732 RLENLQKLTELQRDLVGVENLIAPGREFIREGCLHKLTKKGLQQRMFFLFSDMLLYTSKSVTGAS 796

  Fly   252 HYQEQ------------------------LYAQQQQL----QQQLHQQQQQQQQLQQQQQQHRHK 288
            |::.:                        :||.|:.:    ..:| ::::..|.|....|..:..
Mouse   797 HFRIRGFLPLRGMLVEESENEWSVPHCFTIYAAQKTIVVAASTRL-EKEKWMQDLNAAIQAAKTI 860

  Fly   289 NDLQTPGSEHGTVYIQQNHPNHVVNQACQTQISAVKPKATP-SSEESSSNSTKSPSHAPLDRKKS 352
            .| ..|....|.||.:                       || ||:|.|...::       |.:.:
Mouse   861 GD-SPPVLLGGPVYTR-----------------------TPRSSDEVSLEESE-------DGRGN 894

  Fly   353 AGSIQA---------------LKSPITKRPPSTPV--TLSGWLHK--QGSDGLKVWRKRWFVLAE 398
            .||::.               ..:.:::...|..|  .|||:|.:  :.|:|   |:|.|.|...
Mouse   895 RGSLEGNSQHRANTTMHVCWYRNTSVSRADHSAAVENQLSGYLLRKFKNSNG---WQKLWVVFTN 956

  Fly   399 YCLYYYKGPEEEKLLGSVLLPSYRVSACLPEDKIYRKFAFKCEHQNMRTYWLAADNSEAMMQWVR 463
            :||::||..:::..|.|:.|..|.||.....|.|::.:.||.:.:: ..|:..|::.....:|:.
Mouse   957 FCLFFYKTHQDDYPLASLPLLGYSVSLPREADSIHKDYVFKLQFKS-HVYFFRAESKYTFERWMD 1020

  Fly   464 ALAAASLMQAPSSGESEPSVNSSLNHSGENSDSGIHTLQSHP 505
            .:..||     ||....||.....:|.....::.|...::.|
Mouse  1021 VIKRAS-----SSPGRPPSFTQDCSHHSPGLEAEIREKEACP 1057

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kmrNP_001097775.2 PH_PEPP1_2_3 366..469 CDD:270068 29/106 (27%)
PH 372..469 CDD:278594 28/100 (28%)
Farp2NP_663494.2 B41 45..234 CDD:214604
FERM_N 48..111 CDD:286467
FERM_M 131..234 CDD:278785
FERM_C_FARP1-like 221..341 CDD:270014
FA 333..375 CDD:285894
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 406..489
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 504..534 11/43 (26%)
RhoGEF 540..723 CDD:238091 28/193 (15%)
PH1_FARP1-like 752..859 CDD:269928 16/107 (15%)
PH 760..854 CDD:278594 14/94 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 874..902 9/57 (16%)
PH2_FARP1-like 929..1026 CDD:270055 28/100 (28%)
PH 934..1027 CDD:278594 28/101 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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