DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34334 and Rnp4F

DIOPT Version :10

Sequence 1:NP_001097042.1 Gene:CG34334 / 5740122 FlyBaseID:FBgn0263829 Length:708 Species:Drosophila melanogaster
Sequence 2:NP_511047.2 Gene:Rnp4F / 31448 FlyBaseID:FBgn0014024 Length:941 Species:Drosophila melanogaster


Alignment Length:194 Identity:41/194 - (21%)
Similarity:78/194 - (40%) Gaps:22/194 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   418 FTQLHSSARPSTAKDHDKSPQQNRSGSSGPKGKSSKINDPPRRGSSPSAGAEPTRQKQSVQNQNG 482
            :.:..|..:|::...:   |:|.:   ..|:.:..:.|..|.........|...:|:|..|.::|
  Fly   625 YVKPRSRIKPNSQSAY---PRQQK---LKPRQQQQQTNREPLNREQRRRQAHEQQQQQQQQQKHG 683

  Fly   483 RNCSSQWNHRRGEGDGEGAEASGRGYRAVGEVNKVAYRNGKDA-FKFRQPVRNVRLHIKGLTRQV 546
            ...|.             .|.||.......:|...|....|:: ||:...:...::.::.|....
  Fly   684 IKKSR-------------TEPSGGATSPPSKVKGPANAEAKESNFKYSPNMEINKIFVRNLHPAC 735

  Fly   547 TKEHITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVEYSRPEDCASAIKHMNGGQIDGKLIRVS 610
            :||.:.|:|..||  |..|..:.....:|.:|.|:||:.:|.:...|:...:|....|..|.|:
  Fly   736 SKEELHELFSPFG--TIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKGMNISVA 797

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34334NP_001097042.1 Herpes_BLLF1 <312..504 CDD:282904 14/85 (16%)
RRM_RNPS1 537..610 CDD:409800 19/72 (26%)
Rnp4FNP_511047.2 RRM_SF 722..802 CDD:473069 20/78 (26%)
2A1904 <860..>925 CDD:273344
Lsm_interact 922..940 CDD:398843
Blue background indicates that the domain is not in the aligned region.

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