DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pp1-Y1 and gsp-3

DIOPT Version :9

Sequence 1:NP_001104152.3 Gene:Pp1-Y1 / 5740113 FlyBaseID:FBgn0261399 Length:317 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:291 Identity:137/291 - (47%)
Similarity:195/291 - (67%) Gaps:4/291 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 LDEMIASLLSWKIDRKMM---VPESDIIKLLKQARQVLMSEPMLLTVEAPVNVLGDIHGQYNDLL 78
            :|.:::.||:..:....:   |.|.::......|:.|..|:..||.||.|:.|.|||||||:|||
 Worm     7 VDNLMSRLLNVGMSGGRLTTSVNEQELQTCCAVAKSVFASQASLLEVEPPIIVCGDIHGQYSDLL 71

  Fly    79 RYFETSGHPPKKRYLMLGDYVDRGKYSVETLTLLLAYKVRYPTSIHLLRGNHESAAINRYYGFYD 143
            |.|:.:|.||...:|.||||||||:.::||:.|:|.:|::||.:..:||||||..||||.||||:
 Worm    72 RIFDKNGFPPDVNFLFLGDYVDRGRQNIETICLMLCFKIKYPENFFMLRGNHECPAINRVYGFYE 136

  Fly   144 ECKRRF-TIRLWRMFVDCYDCLPVAAIINSKIFCCHGGLSPSLHNLNDIQHLQRPAEVDRNGLLC 207
            ||.||: :.|||.:|.|.::.:|:..:|.|:|.|.||||||.|..|:.::.|.||.:.....:..
 Worm   137 ECNRRYKSTRLWSIFQDTFNWMPLCGLIGSRILCMHGGLSPHLQTLDQLRQLPRPQDPPNPSIGI 201

  Fly   208 DLLWSDPDPTAIGWEKNSRGVSFTFGVDIVETFLSRFSFDLICRAHQVVEDGYEFFAKRQLITVF 272
            ||||:|||....||:.|:||||:.||.|:|....||...||:.||||||:|||||||.::::|:|
 Worm   202 DLLWADPDQWVKGWQANTRGVSYVFGQDVVADVCSRLDIDLVARAHQVVQDGYEFFASKKMVTIF 266

  Fly   273 SAVNYCGEFDNAGAMMCVDAELNITLVVMKP 303
            ||.:|||:|||:.|.|.||..:..|.|:.||
 Worm   267 SAPHYCGQFDNSAATMKVDENMVCTFVMYKP 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pp1-Y1NP_001104152.3 MPP_superfamily 17..303 CDD:301300 135/289 (47%)
PP2Ac 36..305 CDD:197547 133/269 (49%)
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:301300 135/289 (47%)
PP2Ac 29..299 CDD:197547 133/269 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53795
OrthoDB 1 1.010 - - D327461at33208
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.930

Return to query results.
Submit another query.