DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCBP4 and Psi

DIOPT Version :10

Sequence 1:XP_047304568.1 Gene:PCBP4 / 57060 HGNCID:8652 Length:426 Species:Homo sapiens
Sequence 2:NP_995862.1 Gene:Psi / 36889 FlyBaseID:FBgn0014870 Length:797 Species:Drosophila melanogaster


Alignment Length:379 Identity:82/379 - (21%)
Similarity:132/379 - (34%) Gaps:111/379 - (29%)


- Green bases have known domain annotations that are detailed below.


Human    24 MSGSDGGLEEEPELSITLTLRM--------------LMHGKEVGSIIGKKGETVKRIREQSSAR- 73
            |:...||    .::.:.||:.|              ::.|.:||.:|||.|:|:|:::|::.|: 
  Fly   185 MANRAGG----GQVEVLLTINMPPPGPSGYPPYQEIMIPGAKVGLVIGKGGDTIKQLQEKTGAKM 245

Human    74 ITISEGSCPERI--TTITGSTAAVFHAVSMIAFKLDEDLCA----------APANGGNVSRPPV- 125
            |.|.:|...|.|  ..|:|....:.||..|:.     ||.|          ....||....|.: 
  Fly   246 IIIQDGPNQELIKPLRISGEAQKIEHAKQMVL-----DLIAQKDAQGQQQGGRGGGGGGGGPGMG 305

Human   126 -----------TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVP 179
                       :..:.:|....|.:|||.|..|::|:...|.::|..........:|...:.|..
  Fly   306 FNNFNNGNGGESTEVFVPKIAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEMGDRRCVIQGTR 370

Human   180 DAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSS 244
            ..:....|.|..:|..                    :....|.:..|..|...            
  Fly   371 QQVDDAKRTIDGLIEN--------------------VMQRNGMNRNGNGGGGG------------ 403

Human   245 HAVPFATPSVVPGLDPG------------TQTSSQE--FLVPNDLIGCVIGRQGSKISEIRQMSG 295
                       ||.|.|            .|...:|  ||||....|.||||.|..|..|.|.||
  Fly   404 -----------PGGDSGNSNYGYGYGVNHAQGGREEITFLVPASKCGIVIGRGGETIKLINQQSG 457

Human   296 AHIKIG-NQAEGAGERHVTITGSPVSIALAQYLITACLE-----TAKSTSGGTP 343
            ||.::. |.:....|:.....|:...:..|:.:|:..:.     .::...||.|
  Fly   458 AHTEMDRNASNPPNEKLFKSKGTTDQVEAARQMISEKINMELNVISRKPIGGGP 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBP4XP_047304568.1 KH-I_PCBP4_rpt1 40..109 CDD:411945 24/85 (28%)
KH-I_PCBP4_rpt2 124..195 CDD:411948 15/82 (18%)
KH-I_PCBP4_rpt3 264..331 CDD:411951 23/69 (33%)
PsiNP_995862.1 KH_1 123..184 CDD:459630
KH-I_FUBP_rpt2 214..280 CDD:411825 22/70 (31%)
KH-I_FUBP_rpt3 317..384 CDD:411826 14/66 (21%)
KH-I_FUBP_rpt4 428..494 CDD:411827 23/65 (35%)
DUF1897 591..619 CDD:462653
DUF1897 <653..680 CDD:462653
Blue background indicates that the domain is not in the aligned region.

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