DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC5 and Rpt6R

DIOPT Version :10

Sequence 1:NP_002796.4 Gene:PSMC5 / 5705 HGNCID:9552 Length:406 Species:Homo sapiens
Sequence 2:NP_651811.1 Gene:Rpt6R / 43635 FlyBaseID:FBgn0039788 Length:399 Species:Drosophila melanogaster


Alignment Length:396 Identity:346/396 - (87%)
Similarity:367/396 - (92%) Gaps:3/396 - (0%)


- Green bases have known domain annotations that are detailed below.


Human    11 LEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGE 75
            :.||  ..|...||..||.|||..||::.:||.||||||||||.||||||||||||||||||:.|
  Fly     7 IPEG--SEGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAE 69

Human    76 VVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMV 140
            ||:.|||.|||||||||||:||||||.|:|.||||:.||||||:|||||||||||||||||||:|
  Fly    70 VVKPMDKNKVLVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLV 134

Human   141 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAH 205
            ||||||||||:|||||||:||||||||||||||||:||||.||||||||||||||||||||||||
  Fly   135 EKVPDSTYEMVGGLDKQIQEIKEVIELPVKHPELFDALGITQPKGVLLYGPPGTGKTLLARAVAH 199

Human   206 HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQ 270
            ||:|||||||||||||||||||:||||||||||||||||||||||||||||:|||.|: ||||||
  Fly   200 HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARLETGT-GDSEVQ 263

Human   271 RTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 335
            |||||||||||||||||||||||||||||:||.||||||||||||||||||||||||||||||||
  Fly   264 RTMLELLNQLDGFEATKNIKVIMATNRIDVLDQALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 328

Human   336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMS 400
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||:|||.||||||||
  Fly   329 MNLTRGINLRKIAEEMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVSKVMMKDSEKNMS 393

Human   401 IKKLWK 406
            |:|.||
  Fly   394 IRKFWK 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC5NP_002796.4 PRK03992 24..400 CDD:179699 336/375 (90%)
May mediate interaction with PRPF9. /evidence=ECO:0000250|UniProtKB:P62196 186..406 206/219 (94%)
Rpt6RNP_651811.1 PRK03992 21..395 CDD:179699 337/374 (90%)

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