DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC5 and Rpt4R

DIOPT Version :10

Sequence 1:NP_002796.4 Gene:PSMC5 / 5705 HGNCID:9552 Length:406 Species:Homo sapiens
Sequence 2:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster


Alignment Length:386 Identity:175/386 - (45%)
Similarity:251/386 - (65%) Gaps:10/386 - (2%)


- Green bases have known domain annotations that are detailed below.


Human    29 EELQLIVNDKSQNLR------RLQAQRNE---LNAKVRLLREELQLLQEQGSYVGEVVRAMDKKK 84
            |.::.:.|.:::.|.      :|:|.|::   :||:.....::|:.||..|..|||:::.:....
  Fly    13 ERVRALTNYRTKLLEHREIESKLKALRDKYKVVNAEYEKSEDDLKALQSVGQMVGEILKQLTPDN 77

Human    85 VLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYE 149
            .:||.....::||...:.|:...:.|..||||...:.|:.:.||.:|||||..|..|...:..|.
  Fly    78 FIVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVDPLVYNMTHEDPGNVNYA 142

Human   150 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV 214
            .||||.:||:|::||||||:.:|::|..:||:.|||.||||||||||||||||:|...|..|::|
  Fly   143 EIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKTLLARAIASQMDANFLKV 207

Human   215 SGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQ 279
            ..|.:|.|:|||.||::||:|..||:|.|.||||||||:||..|...|:..|.|:|||::|||||
  Fly   208 VSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ 272

Human   280 LDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL 344
            :|||:|...:|:||||||.|.||.|||||||:|||:|.|.|||.||:||||||:..:|....|:.
  Fly   273 MDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDY 337

Human   345 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM-QKDSEKNMSIKKL 404
            ..:.:|....:||:::.:|||||::|||..|..|.||||..||.|:. .|..|..:..|.:
  Fly   338 EAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIADNKKLESRLDYKPI 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC5NP_002796.4 PRK03992 24..400 CDD:179699 174/380 (46%)
May mediate interaction with PRPF9. /evidence=ECO:0000250|UniProtKB:P62196 186..406 119/220 (54%)
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 172/374 (46%)

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