DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC5 and Rpt6

DIOPT Version :9

Sequence 1:XP_024306608.1 Gene:PSMC5 / 5705 HGNCID:9552 Length:433 Species:Homo sapiens
Sequence 2:NP_608447.1 Gene:Rpt6 / 33105 FlyBaseID:FBgn0020369 Length:405 Species:Drosophila melanogaster


Alignment Length:427 Identity:372/427 - (87%)
Similarity:386/427 - (90%) Gaps:28/427 - (6%)


- Green bases have known domain annotations that are detailed below.


Human     8 QMELEEG-KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGS 71
            :||:|.. ..|.|.|.||:.|||||||:|.:|.||||||||||||||||||:|||||||||||||
  Fly     6 RMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGS 70

Human    72 YVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVSVAGEVVVVVGSALTVPLLKLAPFTQVT 136
            ||||||:.|||||||||||||||||||:||||||||                           ||
  Fly    71 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIND---------------------------VT 108

Human   137 PNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEL 201
            |||||||||:|||||||||||||||||||||||||||||||:|||||||||||||||||||||||
  Fly   109 PNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPEL 173

Human   202 FEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAR 266
            |:|||||||||||||||||||||||||||||||:|||||||||||||||||||:|||||||||||
  Fly   174 FDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAR 238

Human   267 EHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 331
            |||||||||||||||||||:|.|||||||||||||||||||||||||||||||||||||||||.|
  Fly   239 EHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 303

Human   332 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY 396
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   304 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMY 368

Human   397 ALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 433
            |||||||||||||||||||||||||||||||||||||
  Fly   369 ALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC5XP_024306608.1 RPT1 4..431 CDD:224143 368/423 (87%)
Rpt6NP_608447.1 RPT1 17..403 CDD:224143 364/412 (88%)
SlyX <27..>69 CDD:294687 36/41 (88%)
AAA_16 152..>205 CDD:289934 51/52 (98%)
AAA 185..317 CDD:278434 126/131 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 254 1.000 Domainoid score I2074
eggNOG 1 0.900 - - E1_COG0554
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2098
Inparanoid 1 1.050 732 1.000 Inparanoid score I609
Isobase 1 0.950 - 0 Normalized mean entropy S42
OMA 1 1.010 - - QHG53670
OrthoDB 1 1.010 - - D298123at33208
OrthoFinder 1 1.000 - - FOG0003106
OrthoInspector 1 1.000 - - oto88742
orthoMCL 1 0.900 - - OOG6_101513
Panther 1 1.100 - - LDO PTHR23073
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1002
SonicParanoid 1 1.000 - - X2077
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.820

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