DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC1 and Kat60

DIOPT Version :10

Sequence 1:NP_002793.2 Gene:PSMC1 / 5700 HGNCID:9547 Length:440 Species:Homo sapiens
Sequence 2:NP_001262276.1 Gene:Kat60 / 53566 FlyBaseID:FBgn0040208 Length:605 Species:Drosophila melanogaster


Alignment Length:355 Identity:113/355 - (31%)
Similarity:183/355 - (51%) Gaps:65/355 - (18%)


- Green bases have known domain annotations that are detailed below.


Human   104 GTPMSVGTLEEIIDDNHAIVSTSVGS--------EHYVSILSFVDKDLLEPGCSVLLNHKVHAVI 160
            |..:|.....|..||:    ||:.|:        |:.....:..::...:|.     ||....::
  Fly   254 GRKLSTSNTNEARDDD----STAAGNNGGAAGDGENGDPQAAQEEERKFQPN-----NHIEAELV 309

Human   161 GVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPP-KGVIL 224
            .:|..|.        ::|.|:..::||..|.:..:.::|:|.||:..|:|::  ||:.| |||::
  Fly   310 DILERDI--------LQKDPKVRWSDIADLHDAKRLLEEAVVLPMLMPDYFK--GIRRPWKGVLM 364

Human   225 YGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 289
            .||||||||:||||||.:...||..|..:.|..||.|:..|:||.||.:|..:|||.:||||||:
  Fly   365 VGPPGTGKTMLAKAVATECGTTFFNVSSATLTSKYRGESEKMVRLLFEMARFYAPSTIFIDEIDS 429

Human   290 IGTKRYDSNSGGERE---IQRTMLELLNQLDGFDSRGD----VKVIMATNRIETLDPALIRPGRI 347
            :.::|     |.|.|   .:|...|||.|:||.....:    |.|:.|||....:|.||.|  |:
  Fly   430 LCSRR-----GSESEHEASRRVKSELLVQMDGVGGGEEQAKVVMVLAATNFPWDIDEALRR--RL 487

Human   348 DRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDL---SGADIKAICTEAGLMALR- 408
            :::|..|||.::.::.:.:|:...:.:.|.|   ||....::|   |||||..:|.||.:|::| 
  Fly   488 EKRIYIPLPSDEGREALLKINLREVKVDDSV---DLTYVANELKGYSGADITNVCREASMMSMRR 549

Human   409 ----------------ERRMKVTNEDFKKS 422
                            |..:.|:|:||.::
  Fly   550 KIAGLTPEQIRQLATEEVDLPVSNKDFNEA 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC1NP_002793.2 PTZ00361 1..440 CDD:185575 113/355 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 113/355 (32%)
Kat60NP_001262276.1 Kp60-NTD 62..129 CDD:439297
PHA03291 <167..>253 CDD:223033
SpoVK 219..566 CDD:440232 108/340 (32%)
RecA-like_KTNA1 327..493 CDD:410930 73/174 (42%)
Vps4_C <570..603 CDD:462762 4/10 (40%)
Blue background indicates that the domain is not in the aligned region.

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