DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC1 and Rpt3R

DIOPT Version :10

Sequence 1:NP_002793.2 Gene:PSMC1 / 5700 HGNCID:9547 Length:440 Species:Homo sapiens
Sequence 2:NP_649938.2 Gene:Rpt3R / 41190 FlyBaseID:FBgn0037742 Length:405 Species:Drosophila melanogaster


Alignment Length:397 Identity:188/397 - (47%)
Similarity:282/397 - (71%) Gaps:32/397 - (8%)


- Green bases have known domain annotations that are detailed below.


Human    54 PH--------TQCRLKLLKLERIKDYLLMEE-----EFIRNQEQMKPLEEKQEEERSKVDDLRGT 105
            ||        .|..|:|::::  :||:..|:     |||..||::|              .::..
  Fly    24 PHDLYVLYKKLQMELELIQVQ--EDYIKEEQRNLKKEFIHAQEEVK--------------RIKAV 72

Human   106 PMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPL 170
            |:.:|...|.:|:|:.||:::.||.:||.:||.:|::.|:|..||.|:.:.:.::.::..:.|..
  Fly    73 PLVIGQFLEAVDENNGIVASTTGSNYYVRVLSTIDREQLKPSSSVGLHKQSNCLVDLVPPEADST 137

Human   171 VTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 235
            ::::..::.|..:|:||||||.|.|||:|:|||||||.:.|:::||.||:||:|:||||.|||:|
  Fly   138 ISMLSPDEKPDISYSDIGGLDIQKQEIREAVELPLTHAQLYKQIGIDPPRGVLLFGPPGCGKTML 202

Human   236 AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300
            |||||:.|:|:|:||||||.:|||||:||::||:|||:|::::|||:||||||||.|||:|:.:|
  Fly   203 AKAVAHHTTASFIRVVGSEFVQKYLGEGPRMVRDLFRLAKQNSPSIIFIDEIDAIATKRFDAQTG 267

Human   301 GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIF 365
            .:||:||.:||||||:||||...::||||||||.:||||||:||||:|||||.||||.:.|:.:|
  Fly   268 ADREVQRILLELLNQMDGFDETTNIKVIMATNRADTLDPALLRPGRLDRKIELPLPDRRQKRLVF 332

Human   366 QIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS-KENVLYK 429
            ...||:|.:.:||.|:|:|...|.:|.|||.|||.|||:.|:||.|..|..:||:|. |.:|  :
  Fly   333 TTITSKMNVGEDVDLEDIIARPDKISNADINAICQEAGMHAVRENRYVVNAKDFEKGYKTSV--R 395

Human   430 KQEGTPE 436
            |.|...|
  Fly   396 KDEAQHE 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC1NP_002793.2 PTZ00361 1..440 CDD:185575 188/397 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 1/19 (5%)
Rpt3RNP_649938.2 PTZ00454 20..405 CDD:240423 188/397 (47%)
Blue background indicates that the domain is not in the aligned region.

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