DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC1 and Afg3l2

DIOPT Version :10

Sequence 1:NP_002793.2 Gene:PSMC1 / 5700 HGNCID:9547 Length:440 Species:Homo sapiens
Sequence 2:NP_730248.2 Gene:Afg3l2 / 39922 FlyBaseID:FBgn0036702 Length:826 Species:Drosophila melanogaster


Alignment Length:385 Identity:130/385 - (33%)
Similarity:198/385 - (51%) Gaps:61/385 - (15%)


- Green bases have known domain annotations that are detailed below.


Human    76 EEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFV- 139
            :.|.||      ||..|.|:.:  :.:...|        :|..|....::..|....:.|:.|: 
  Fly   237 DSFERN------LEAAQTEQGT--ESINFVP--------VIYRNEVEAASLTGLLPTLLIIGFLV 285

Human   140 -----DKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET---YADIGGLDNQIQE 196
                 ..|::..|    ...|...:.|.:|..|..|..       |.|.   :.|:.|.:....|
  Fly   286 YMMRKSADMMGGG----RGRKGGGLFGGVMQSTAKLTN-------PNEIGVGFKDVAGCEEAKIE 339

Human   197 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 261
            |.|.|.. |.:|:.|.::|.|.|||.:|.|||||||||||||.|.:.:..|:.|.|||.::.::|
  Fly   340 IMEFVNF-LKNPQQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVG 403

Human   262 DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVK 326
            .||..||::|.:|.:|||.|:|||||||:|.||.....||..|.:.|:.:||.::|||::..:|.
  Fly   404 VGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENTLNQLLVEMDGFNTTTNVV 468

Human   327 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLS 391
            |:.||||::.||.||:||||.||:|..|.||.|.:..||::|...:..:.|         |::||
  Fly   469 VLAATNRVDILDKALMRPGRFDRQIYVPAPDIKGRASIFKVHLGNLKTSLD---------KNELS 524

Human   392 -----------GADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGT----PE 436
                       ||||..:|.||.|:|.|:.:..:..:.|:::.|.|:...::.|    ||
  Fly   525 RKMAALTPGFTGADIANVCNEAALIAARDSKDSIVLKHFEQAIERVIAGMEKKTNVLAPE 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC1NP_002793.2 PTZ00361 1..440 CDD:185575 130/385 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 4/19 (21%)
Afg3l2NP_730248.2 HflB 168..765 CDD:440233 130/385 (34%)
Blue background indicates that the domain is not in the aligned region.

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