DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC1 and Rpt4R

DIOPT Version :10

Sequence 1:NP_002793.2 Gene:PSMC1 / 5700 HGNCID:9547 Length:440 Species:Homo sapiens
Sequence 2:NP_648525.1 Gene:Rpt4R / 39351 FlyBaseID:FBgn0036224 Length:398 Species:Drosophila melanogaster


Alignment Length:393 Identity:173/393 - (44%)
Similarity:247/393 - (62%) Gaps:19/393 - (4%)


- Green bases have known domain annotations that are detailed below.


Human    50 PLVTPHTQC-RLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEK-----QEEERSKVDDLRGTPMS 108
            ||..|.|.. |::.|...|.|   |:|...|  :.::|.|.:|     .|.|:|: |||:.. .|
  Fly     4 PLANPPTDDERVRALTNYRTK---LLEHREI--ESKLKALRDKYKVVNAEYEKSE-DDLKAL-QS 61

Human   109 VG-----TLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTD 168
            ||     .|:::..||. ||..|.|..:.|.....::|:.|:||..|.|:.....::..|..:.|
  Fly    62 VGQMVGEILKQLTPDNF-IVKASNGPRYVVGCRRQINKEKLKPGTRVALDVTTLTIMRYLPREVD 125

Human   169 PLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 233
            |||..|..|......||:||||..||:|::|.:||||.:|:.:..:||.||||.:||||||||||
  Fly   126 PLVYNMTHEDPGNVNYAEIGGLGQQIRELREVIELPLLNPDIFLRVGISPPKGCLLYGPPGTGKT 190

Human   234 LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN 298
            |||:|:|:|..|.||:||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||||.:|:...
  Fly   191 LLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARDHQPCIIFMDEIDAIGGRRFSEG 255

Human   299 SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKR 363
            :..:||||||::|||||:||||:.|.||:||||||.:||||||:||||:|||:|.|||:|..:..
  Fly   256 TSADREIQRTLMELLNQMDGFDALGQVKMIMATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMD 320

Human   364 IFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLY 428
            |.:||...:....::..:.::...|..:|||::.|||||||.|||..|..|..|||.|:...:..
  Fly   321 ILKIHAEPLNKRGEIDYEAVVKLSDLFNGADLRNICTEAGLFALRCDREFVIQEDFMKAVRKIAD 385

Human   429 KKQ 431
            .|:
  Fly   386 NKK 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC1NP_002793.2 PTZ00361 1..440 CDD:185575 173/393 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 9/24 (38%)
Rpt4RNP_648525.1 PRK03992 13..388 CDD:179699 168/382 (44%)
Blue background indicates that the domain is not in the aligned region.

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