DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSMC1 and Rpt4

DIOPT Version :10

Sequence 1:NP_002793.2 Gene:PSMC1 / 5700 HGNCID:9547 Length:440 Species:Homo sapiens
Sequence 2:NP_572308.3 Gene:Rpt4 / 31567 FlyBaseID:FBgn0028685 Length:397 Species:Drosophila melanogaster


Alignment Length:382 Identity:164/382 - (42%)
Similarity:248/382 - (64%) Gaps:19/382 - (4%)


- Green bases have known domain annotations that are detailed below.


Human    63 LKLERIKDYLLMEEEFIRNQEQMKPLEEKQEE--------ERSKVDDLRGTPMSVG-----TLEE 114
            |:::.:.:|   .::.:.::|....|:||:||        ::|: :||:.. .|||     .|::
  Fly    12 LRVKALSEY---RKKLLEHKEIEGRLKEKREEIKDLTKLYDKSE-NDLKAL-QSVGQIVGEVLKQ 71

Human   115 IIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKA 179
            :.:|...:.:|: |..:.|.....:||..|:.|..|.|:.....::..|..:.||||..|..|..
  Fly    72 LTEDKFIVKATN-GPRYVVGCRRQLDKAKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDP 135

Human   180 PQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 244
            ...||:.||||.:||:|::|.:||||.:||.:..:||.||||.:|||||||||||||:|||:|..
  Fly   136 GDVTYSAIGGLTDQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLD 200

Human   245 ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTM 309
            |.||:||.|.::.||:|:..:|:||:|..|.:|.|.|:|:|||||||.:|:...:..:||||||:
  Fly   201 ANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTL 265

Human   310 LELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTL 374
            :|||||:|||||.|.||:||||||.:||||||:||||:|||||.|||:|:.:..|.:||..::..
  Fly   266 MELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAK 330

Human   375 ADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQ 431
            ..::..:.::...|:.:|||::.:||||||.|:|..|..|..|||.|:...|...|:
  Fly   331 HGEIDYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKK 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSMC1NP_002793.2 PTZ00361 1..440 CDD:185575 164/382 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..49
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..104 8/27 (30%)
Rpt4NP_572308.3 PRK03992 13..387 CDD:179699 162/379 (43%)
Blue background indicates that the domain is not in the aligned region.

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