DRSC/TRiP Functional Genomics Resources

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Protein Alignment LHX9 and CG4328

DIOPT Version :10

Sequence 1:XP_011508083.2 Gene:LHX9 / 56956 HGNCID:14222 Length:403 Species:Homo sapiens
Sequence 2:NP_648567.2 Gene:CG4328 / 39405 FlyBaseID:FBgn0036274 Length:544 Species:Drosophila melanogaster


Alignment Length:375 Identity:100/375 - (26%)
Similarity:151/375 - (40%) Gaps:98/375 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    61 GRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY 125
            |.:.|:...||:. :.||.|...|.|||.:..|:..:|..||||..|.|.|..  :|:|::|.:|
  Fly   184 GMELGLAMASPQL-SQCAHCCQPICDRYIMRVVENSFHEGCLKCTACSLHLVH--SCYAREGKLY 245

Human   126 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCR 190
            |:.||.|.:....|..|.|.|:|.|:|||..::|:||.||.|..|...|..|:.:.:|...::||
  Fly   246 CRVDYERLYIRNHCLGCGLKIAADELVMRCHENVFHLKCFACVVCGALLKKGEQYVVKQGQLFCR 310

Human   191 AHFE---TLLQGE-------YPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDI 245
            ..:|   .:|||.       :||:|.                            .|:.|      
  Fly   311 FDYEKEVEMLQGYDFYGDELFPPKLD----------------------------GRRGP------ 341

Human   246 VNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT 310
                                        ||.||.....|.|..|:.|.::..|..|..:.||:.|
  Fly   342 ----------------------------KRPRTILNTQQRRAFKASFEVSPKPCRKVRENLAKDT 378

Human   311 GLTKRVLQVWFQNARAKFRR--NLLRQE---NGGVDKAD---------GTSLPAPPSADSGALTP 361
            ||:.|::||||||.|||.::  ...:||   .|..|..|         .|.:.....:||.:...
  Fly   379 GLSLRIVQVWFQNQRAKVKKIQKKAKQEPPSKGASDSQDSQESLDSSLATKIKDEAHSDSESQLE 443

Human   362 PGTATTLTDLTNPTITVVTS---------VTSNMDSHESGSPSQTTLTNL 402
            ...:||...||....|:...         .|:..:.:::..|...|:..|
  Fly   444 SPYSTTSDGLTRMRCTIKDEQEQVPFNCMETNKENCNKNSEPILNTILGL 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LHX9XP_011508083.2 LIM1_Lhx2 67..130 CDD:188853 23/62 (37%)
LIM2_Lhx2_Lhx9 135..193 CDD:188763 21/57 (37%)
Homeodomain 274..330 CDD:459649 25/55 (45%)
CG4328NP_648567.2 LIM1_Lmx1b 199..251 CDD:188757 22/53 (42%)
LIM 259..313 CDD:413332 21/53 (40%)
COG5576 <332..439 CDD:227863 37/168 (22%)
HOX 341..393 CDD:197696 23/85 (27%)

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