DRSC/TRiP Functional Genomics Resources

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Protein Alignment LHX9 and CG5708

DIOPT Version :10

Sequence 1:XP_011508083.2 Gene:LHX9 / 56956 HGNCID:14222 Length:403 Species:Homo sapiens
Sequence 2:NP_609359.1 Gene:CG5708 / 34361 FlyBaseID:FBgn0032196 Length:241 Species:Drosophila melanogaster


Alignment Length:181 Identity:63/181 - (34%)
Similarity:85/181 - (46%) Gaps:36/181 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    76 LCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESELTCFAKDGSIYCKEDYYRRFSVQR 138
            :|.|||.||||||.|.|:|:.||..|||  ||...|| |...:||.:.|.|.||:||...|....
  Fly    77 VCGGCGDKISDRYLLYALDRYWHNGCLKCHCCGAMLA-EVGSSCFTRRGLILCKKDYSSMFGCSG 140

Human   139 -CARCHLGISASEMVMRAR----------------DSVYHLSCFTCSTCNKTLTTGDHFGMKDSL 186
             |:.|...|..||:|.:|.                :.|:||.||:|:.|..:|..||.:.|..:.
  Fly   141 VCSGCGETIPPSELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGAS 205

Human   187 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRK 237
            :.|...:..||:|   |..|...|..:.|             :.||||:.|
  Fly   206 LVCEQDWHKLLKG---PANSNGTLGQRKG-------------KVGRPRRSK 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LHX9XP_011508083.2 LIM1_Lhx2 67..130 CDD:188853 29/55 (53%)
LIM2_Lhx2_Lhx9 135..193 CDD:188763 19/74 (26%)
Homeodomain 274..330 CDD:459649
CG5708NP_609359.1 LIM1_LMO4 78..132 CDD:188772 29/54 (54%)
LIM 142..212 CDD:413332 19/69 (28%)
Blue background indicates that the domain is not in the aligned region.

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