DRSC/TRiP Functional Genomics Resources

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Protein Alignment LHX9 and Bx

DIOPT Version :10

Sequence 1:XP_011508083.2 Gene:LHX9 / 56956 HGNCID:14222 Length:403 Species:Homo sapiens
Sequence 2:NP_001259687.1 Gene:Bx / 32846 FlyBaseID:FBgn0265598 Length:424 Species:Drosophila melanogaster


Alignment Length:214 Identity:78/214 - (36%)
Similarity:96/214 - (44%) Gaps:37/214 - (17%)


- Green bases have known domain annotations that are detailed below.


Human    76 LCAGCGGKISDRYYLLAVDKQWHLRCLK--CCECKLALESELTCFAKDGSIYCKEDYYRRF-SVQ 137
            ||||||..|.|||.|.|:|..||..|||  ||:|:|. |...|.:.|...:.||.||.|.| :..
  Fly    91 LCAGCGKHIQDRYLLRALDMLWHEDCLKCGCCDCRLG-EVGSTLYTKGNLMLCKRDYLRLFGNTG 154

Human   138 RCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLL----Q 198
            .||.|...|.|.|||||||.:||||.||.|..||.....||.|.:.::.:.|...:|..|    .
  Fly   155 YCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVFASM 219

Human   199 GEYP---------PQLSYTELAA---KSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSG 251
            ..:|         .|.|.|..|.   .:||| |....|.|.|.            ||.:||    
  Fly   220 ANHPMLKRHVSSLGQGSPTGAAGAQNTAGGL-LGGGPGGGNVN------------GVGMVN---- 267

Human   252 CNENEADHLDRDQQPYPPS 270
            ......||.:.:..|..|:
  Fly   268 GPRTPGDHNNNNNGPQTPT 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LHX9XP_011508083.2 LIM1_Lhx2 67..130 CDD:188853 27/55 (49%)
LIM2_Lhx2_Lhx9 135..193 CDD:188763 25/57 (44%)
Homeodomain 274..330 CDD:459649
BxNP_001259687.1 LIM1_LMO1_LMO3 92..146 CDD:188774 26/54 (48%)
LIM2_dLMO 156..210 CDD:188776 25/53 (47%)
Blue background indicates that the domain is not in the aligned region.

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