DRSC/TRiP Functional Genomics Resources

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Protein Alignment PSG1 and ceacam1

DIOPT Version :9

Sequence 1:NP_001284702.1 Gene:PSG1 / 5669 HGNCID:9514 Length:428 Species:Homo sapiens
Sequence 2:NP_001107266.1 Gene:ceacam1 / 114465 ZFINID:ZDB-GENE-010724-14 Length:1025 Species:Danio rerio


Alignment Length:511 Identity:118/511 - (23%)
Similarity:187/511 - (36%) Gaps:153/511 - (29%)


- Green bases have known domain annotations that are detailed below.


Human    31 PTTAQVTIEAEPTKVSEGKDVLLLVHNLPQNLTGYIWYKGQMRDLYHYITSYVVDGEIIIYGPAY 95
            |...||.:......|:.|.:|.|.| |....:|..:|..|.......|:      |:||   |..
Zfish    15 PGLCQVNVVPSNNPVAVGSNVTLDV-NSSMPITVGLWLFGPSTLFMWYM------GDII---PGN 69

Human    96 SGRETAYSNAS---LLIQNVTREDAGSYTLHIIKGDDGTRGVTGRFTFTLHLETPKP------SI 151
            |.:...|.|:|   |.:..||.|.:|.|.|.:.|        ..|....:.||..:|      ::
Zfish    70 SLQPGVYFNSSTYQLTLSAVTLESSGVYVLDVYK--------PNRIRSEITLEVQEPVGNVNTTV 126

Human   152 SSSNLNPRETMEAVSLTCDPETPDASYLW--WMNGQSLPMTHS-LKLSETNRTLFLLGVTKYTAG 213
            :::||  .|..:.|..||...|   |.:|  |:||.|...... ::|..:.:||.:.|||:|..|
Zfish   127 NTTNL--VEVNDTVYFTCSVTT---SPVWFSWLNGNSAVKDGGRVQLQNSGQTLIINGVTRYDEG 186

Human   214 PYECEIRNPVSASRSDPVTLNL--------LPKLPKPYITINNLNPRENKDVLNFTCEPKSE-NY 269
            |::|.:.|.:|:.:|..:.||:        |..:|:..:.|:..|       .:.:|...|: ..
Zfish   187 PFKCVVVNNISSQQSVEMKLNISYGPGNLTLTAMPEKTVYISGSN-------FSLSCSADSKPTA 244

Human   270 TYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRD----RYGGIRS-----DPVT 325
            |:.|.|||..|.|:        ..:.:....|:|::|.|.|..::    ||..:..     ||::
Zfish   245 TFNWMLNGNLLNVN--------GPVYVFTKATQNQSGVYTCGAQNAATLRYAAVTKTIRIVDPIS 301

Human   326 ----------------------------------------------------------------- 325
                                                                             
Zfish   302 EVVVNSTSFPVENVPFNLRCNVVGPVDSIQWMKDGVYLYTDNTTTLSSDNSTLSFKQLALSDDGL 366

Human   326 -----------------LNVLYGPDLPRIYPSFTYYRSGEVLYLSCSADSNPPAQYSWTINEKFQ 373
                             |.|.|||....:...|. ...|:.:..|||::|.|.:||||..|....
Zfish   367 YQCTASNAVSDMTQAYNLTVNYGPINTAVSGPFV-AAVGDSVTFSCSSNSRPQSQYSWYFNGFNV 430

Human   374 LPGQKLFIRHITTKHSGLYVCSVRNSATGKESSKSMTVEVSAYSSS--INYTSGNR 427
            ..|.......:....||||.|...||.|||.::.|||:.|....|:  :|.:.|.:
Zfish   431 FNGPVYVTAALLQNQSGLYTCMAFNSITGKTNNNSMTLTVLVPVSNVVVNISDGQQ 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PSG1NP_001284702.1 Ig_CEACAM_D1 36..138 CDD:143251 27/104 (26%)
IG_like 41..>121 CDD:214653 23/82 (28%)
Ig 148..236 CDD:299845 29/104 (28%)
IG_like 163..221 CDD:214653 20/60 (33%)
Ig 241..329 CDD:299845 21/179 (12%)
IG_like 256..328 CDD:214653 19/163 (12%)
Ig_2 335..413 CDD:290606 26/77 (34%)
IG_like 339..413 CDD:214653 26/73 (36%)
ceacam1NP_001107266.1 Ig 32..115 CDD:299845 27/100 (27%)
Ig 133..208 CDD:299845 25/77 (32%)
IG_like 221..291 CDD:214653 19/84 (23%)
Ig_2 221..284 CDD:290606 17/77 (22%)
Ig 298..387 CDD:299845 3/88 (3%)
Ig_2 400..469 CDD:290606 25/69 (36%)
IG 400..456 CDD:214652 17/56 (30%)
Ig 480..564 CDD:299845 2/7 (29%)
IG_like 494..559 CDD:214653
IG_like 578..648 CDD:214653
Ig_2 579..648 CDD:290606
Ig_CEACAM_D4 650..741 CDD:143217
IG_like 653..740 CDD:214653
Ig_2 752..825 CDD:290606
IG_like 755..825 CDD:214653
Ig 827..917 CDD:299845
IG_like 836..917 CDD:214653
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 56 1.000 Domainoid score I34796
eggNOG 1 0.900 - - E1_29WEF
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
NCBI 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D312709at7742
OrthoFinder 1 1.000 - - FOG0000658
OrthoInspector 1 1.000 - - mtm6720
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.820

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