DRSC/TRiP Functional Genomics Resources

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Protein Alignment rad21b and vtd

DIOPT Version :9

Sequence 1:NP_001038585.1 Gene:rad21b / 566831 ZFINID:ZDB-GENE-060503-223 Length:637 Species:Danio rerio
Sequence 2:NP_001015132.1 Gene:vtd / 3354896 FlyBaseID:FBgn0260987 Length:715 Species:Drosophila melanogaster


Alignment Length:750 Identity:280/750 - (37%)
Similarity:392/750 - (52%) Gaps:156/750 - (20%)


- Green bases have known domain annotations that are detailed below.


Zfish     1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVKMALRTSGHLLLGVVR 65
            |||.|.:|:|:||||:||||||||||:|||||||.|:|.|||.|:.||||:||||||||||||||
  Fly     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLLLGVVR 65

Zfish    66 IYHRKAKYLLADCNEAFIKIKMAFRPGVVDLPEENREAAYNAITLPEEFHDFDQPLPDLDDIDVA 130
            ||.||||||||||||||:|||||||||:|||||.:|||..|||||||.|||||..||:|:|||:.
  Fly    66 IYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTALPELNDIDIE 130

Zfish   131 QQFTLNQSRVEEITMREEVGNLSL-LQENDFADFGMDDR--EMMR-------EEGAFEVDIIHGA 185
            .||::||||.:||||||:.|:||| ||::.|.|.|.:..  |::|       .:..|:.|::...
  Fly   131 AQFSINQSRADEITMREDYGSLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIFDNDVLENI 195

Zfish   186 SASNLLLESESSSVQIADKTNHLEYDQYKDDFGDNPMESTEGGMLVDKLLSNEDGGGIFDDPPAI 250
            .:    |:..|.........:.|:.|.:.|.||             ...|..:|   :|.||...
  Fly   196 ES----LDPHSLDAHADMPGSRLDGDGFGDSFG-------------QPALFEDD---LFGDPSQP 240

Zfish   251 PEGVMMPQDH--GADDDDD--FDNLSPAGGPDSPDSGPVEPLPTMTDQTEQT------------- 298
            .|.:......  .|||.|:  .||:.....|.:.....:|      |:.|:.             
  Fly   241 VEQITKESTTVLNADDSDEDAIDNIHNVPSPATSLVNSIE------DEKEENNLNGHASVSENVP 299

Zfish   299 ----TLVHNEEEAFALEPIDITVKE--TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDL 357
                |||.||:|.|||.|:|:::.:  ||||||||||:|.:|.:..:.::|||:|.|||:|||||
  Fly   300 MNEITLVQNEDEGFALAPLDVSMYKGVTKAKRKRKLIIDEIKNISGEEMKAQLADTSDILTTLDL 364

Zfish   358 APPTKKLMMWKETGGVEKLFSLPAQPL--------WNSRLL--KMFTRCLTPLVPDEL------- 405
            |||||:||.||||||||||||||::.:        :|.:|.  ..|....:.:||.|:       
  Fly   365 APPTKRLMYWKETGGVEKLFSLPSRSIPARALFGNYNRQLFSHSTFFEDFSSVVPMEILALEFYT 429

Zfish   406 -------------RKRRKGGEADSL------DEFLKDLENPEVPR-------------------E 432
                         .::||.....:|      |..::.||.|||.|                   :
  Fly   430 KENENALIIFNKKGRKRKNDNMSNLFLDHVPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQ 494

Zfish   433 EALNQQRDIIDQTILEEPSVLQASAMEGSRTTLDESVMPPPSGPRGQKRKAQD----GEPALPML 493
            |:::.|.::.....:..|.:|..:.||..     .|:...|..||....:..|    |:.....|
  Fly   495 ESISCQNELTFFDNMRSPDLLSLNEMEQF-----SSINELPLTPRNMNHEMGDDFNQGDSTPAGL 554

Zfish   494 EDDRSSIVSTQHVSLPQVE----LPPEEPVNIAQLIPDLDLIGEKSKDKKDDD------------ 542
            :...:   :.||.::.:::    :|.::...|........::.:....|:.::            
  Fly   555 DHGHA---TPQHGNIGEMDHDSVIPTKKTAVILNESVGTSVLSDNGVSKRTNNILKGWDNYEIPS 616

Zfish   543 -------DEEEEEEGQSGDQDQEERRWNKRTQQMLHGLQ-RVIAKTGAESISLLDLCRNNNKKQA 599
                   ||:.|.|   .|:..|||..|||...:...:: ..|||   :|:.|..|...|::|||
  Fly   617 FVGQNHGDEQMENE---TDEQFEERVLNKRAAHLFIDVRAHFIAK---DSLELSQLTSGNSRKQA 675

Zfish   600 AAKFYSFLVLKKQQAVELRQDEPYSDIIATPGPRF 634
            |.||||.|||||.:.:.:.|..||:||..|.||.|
  Fly   676 AQKFYSLLVLKKFKVLHIDQSAPYADITITRGPTF 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rad21bNP_001038585.1 Rad21_Rec8_N 1..104 CDD:282655 83/102 (81%)
Rad21_Rec8 580..634 CDD:282654 25/53 (47%)
vtdNP_001015132.1 Rad21_Rec8_N 1..106 CDD:282655 84/104 (81%)
Rad21_Rec8 657..710 CDD:282654 27/55 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593645
Domainoid 1 1.000 190 1.000 Domainoid score I3204
eggNOG 1 0.900 - - E1_KOG1213
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38161
Inparanoid 1 1.050 401 1.000 Inparanoid score I1886
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1253899at2759
OrthoFinder 1 1.000 - - FOG0001363
OrthoInspector 1 1.000 - - otm25500
orthoMCL 1 0.900 - - OOG6_103388
Panther 1 1.100 - - LDO PTHR12585
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1058
SonicParanoid 1 1.000 - - X1093
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.790

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