DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kcng4b and Shawl

DIOPT Version :9

Sequence 1:XP_009301775.1 Gene:kcng4b / 566228 ZFINID:ZDB-GENE-130530-634 Length:535 Species:Danio rerio
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:552 Identity:139/552 - (25%)
Similarity:214/552 - (38%) Gaps:158/552 - (28%)


- Green bases have known domain annotations that are detailed below.


Zfish    56 VDHSKLALINVGGDRYTFPWSTLDEFPLSRLGQLRHCSSPDDIAQLCDDYDEARREFFFDRSSVA 120
            :|.....::||.|.||....:||.:.|.:||.:|         .:...:||....|:||||....
  Fly     1 MDGENRIILNVSGIRYETYKATLKKIPATRLSRL---------TEALANYDPVLNEYFFDRHPGV 56

Zfish   121 FRVILNFLAAGKLRLLRQVCAVSLSDELTYWGIDPVHMERCC------------RRKLLSRVEDV 173
            |..|||:...|||.....||.....:||.:||:|...:|.||            ...:|.:::  
  Fly    57 FTQILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLD-- 119

Zfish   174 AEKKKKEDERKQKRHALQRPLAQDK--GFIRLMNRLQEIVENPHSGWAGKLFACFSVVMIAVTVI 236
            .|.:|..:|:..:....:..|:..:  .:.|:..::..:.:.|.|....|:.|..||..|.|:||
  Fly   120 IENEKPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVI 184

Zfish   237 SLCISTLP-----------------------DHENRGE--------------------------- 251
            |.|:.|.|                       .|:..||                           
  Fly   185 SFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTN 249

Zfish   252 ------------------CTEK-------CRNI-------------------------------- 259
                              .|.|       .|||                                
  Fly   250 YTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPH 314

Zfish   260 ---FIVETVCVAWFSMEFLLRFLQAESKMQFLRNPLNVIDVIAILPYYISLVVDSEDTSDEAELN 321
               |.||.||..||.:|.::|.:.:.:..||:::|:|:||..|.|.:|..:            :.
  Fly   315 EAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV------------MQ 367

Zfish   322 GAGTSRGYLDKLGLILRVMRALRILYVMRLARHSLGLQTLGLTMQRSMREFGLLLLFLCVAVALF 386
            ..|...|.|:...::       ||:.:.:|.|||.||:.|..|.:.|.:|..||:.||.:.:..|
  Fly   368 RMGEYTGLLEAFSIV-------RIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFF 425

Zfish   387 SPLVHLAEKEFSKGKATGPNSFSSIPASYWWAIISMTTVGYGDMVPYSIPGQVVAFSSILSGILI 451
            :.|.:.|||.    :....|.|.|||...||||::||||||||:.|.:.||..|.....|:|:|.
  Fly   426 ASLAYYAEKL----QDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLT 486

Zfish   452 MAFPATSIFHVFSRSYHELKREQEMIYKEERV 483
            :|.|...|...||..|...:...::..|..||
  Fly   487 IALPVPVIVSNFSMFYSHTQARSKLPKKRRRV 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kcng4bXP_009301775.1 BTB_2 64..161 CDD:280393 33/96 (34%)
BTB <102..163 CDD:197585 24/72 (33%)
Ion_trans 259..471 CDD:278921 73/246 (30%)
Ion_trans_2 <414..465 CDD:285168 23/50 (46%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/100 (34%)
BTB_2 7..97 CDD:280393 33/98 (34%)
Ion_trans 307..506 CDD:278921 72/221 (33%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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