DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf145a and sip3

DIOPT Version :9

Sequence 1:XP_005157379.1 Gene:rnf145a / 565986 ZFINID:ZDB-GENE-111012-3 Length:649 Species:Danio rerio
Sequence 2:NP_001263152.1 Gene:sip3 / 43747 FlyBaseID:FBgn0039875 Length:626 Species:Drosophila melanogaster


Alignment Length:415 Identity:87/415 - (20%)
Similarity:159/415 - (38%) Gaps:116/415 - (27%)


- Green bases have known domain annotations that are detailed below.


Zfish   229 VLFMCFWLV--LFALQIYTYFSTRDQPTSRERLLFLFLTSIAECCCTPYSLLGLVFTV------- 284
            |:::.|:::  :|...:...|....:....|.||..|..::.|.|        |.|||       
  Fly    43 VIYIQFFVIVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETC--------LAFTVFRDDFNP 99

Zfish   285 SFVALGVLTLCKFYLQGYRAFMNDNTMHRGMTEGITLLILAVQTGLIELQVIHRAFLLSIILFIV 349
            .||||..:.|   :|:.:.....:                       .:..:.|:.:|..:..|.
  Fly   100 RFVALFTVLL---FLKSFHWLAEE-----------------------RVDFMERSPVLGWLFHIR 138

Zfish   350 VASILQSMLEIADPIVLALGASRDKSLWKHFRAVSLCLFLLVFPAYMSYMI----CQF-FHMDFW 409
            |.|:| ::|.|.|                         ::|:..||.|.::    .|. |..::.
  Fly   139 VGSLL-TVLGILD-------------------------YVLLIHAYNSTLVRGPTVQLVFGFEYA 177

Zfish   410 LLIIISSSILTSLQVLGTLLIYVLFMVEELRKAPVENMDDVIYW---VNGTYRLLEFLVALCVVA 471
            :|:.:.:|         |.:.|||...|.....|.||....:.:   |.|..:::.:::.:.::|
  Fly   178 ILLTVIAS---------TAIKYVLHAAEMRTDTPWENKAVFLLYTELVIGLIKVVLYILFVVIMA 233

Zfish   472 --YGVSETVFGEWTVMGSTIVLIHSYYNVWLRAQLGWQSFLLRRDAVNKIKSL-PTASLQQLQQH 533
              |.:...||   ..|..||.......|          ..::.|.|:..:.:| |.|:.::|:|.
  Fly   234 KIYALPMFVF---RPMFFTIRNFRKALN----------DVIMSRRAIRNMNTLYPDATPEELRQS 285

Zfish   534 NDICSICYQDMTS-AVITPCSHLFHAGCLKKWLYVQETCPLCHNQL-------------KGSSQL 584
            ::||.||.:||.: :...||.|:||..||:.|...|:|||.|...:             :|...:
  Fly   286 DNICIICREDMVNHSKKLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPTVNSTAMPRQGDEAV 350

Zfish   585 GSSSQDVPPQDTPAQPEEDQDPSEP 609
            .:::.:..|.....||.....|..|
  Fly   351 AAAAGNPIPAAAGVQPAGGVPPPAP 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf145aXP_005157379.1 TRC8_N 8..506 CDD:290425 55/295 (19%)
zf-RING_2 535..575 CDD:290367 18/40 (45%)
sip3NP_001263152.1 HRD1 20..>365 CDD:227568 83/403 (21%)
zf-RING_2 287..328 CDD:290367 18/40 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590378
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5243
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D897451at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.750

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