DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ddr2l and smal

DIOPT Version :9

Sequence 1:XP_021327249.1 Gene:ddr2l / 565333 ZFINID:ZDB-GENE-041210-162 Length:873 Species:Danio rerio
Sequence 2:NP_723165.2 Gene:smal / 5740323 FlyBaseID:FBgn0085409 Length:939 Species:Drosophila melanogaster


Alignment Length:596 Identity:187/596 - (31%)
Similarity:262/596 - (43%) Gaps:104/596 - (17%)


- Green bases have known domain annotations that are detailed below.


Zfish    14 TNGQIDPAHCRYPLGMEDGRIKNDDITASSQWYDS--TGPQYARLNREEGEGAWCAAGQLQPSDV 76
            |....|.|.|..|||||...|.:..|||||. :|.  .|||:|||..:...||||....:..:..
  Fly    69 TTMAFDIATCNVPLGMESLLITDAQITASSA-HDMAFVGPQHARLKTDNDGGAWCPKHMVSNALK 132

Zfish    77 QYLQIDLRQLIFLTVVATQGRYARNSGIEFARKYRLEYSRDG-HRWISWRNRFGNEIIMGNVNTY 140
            :|||:||.|...:|.:.|||||.:..|.|:...|.|||.|.| .:|..|:|..|.||:.||:|||
  Fly   133 EYLQVDLLQTHVITAIRTQGRYGKGQGQEYTEAYVLEYWRPGFDKWQRWKNIQGKEILPGNINTY 197

Zfish   141 DTVVRDLHPPIITRFLRLIPVTDAVHTVCMRVELFGCAWQDGLMAYSSPEGQIMMAPGFPITSLN 205
            ..|...|.|.|....:|:.|......|||:|.|:.||.|::|:::||.|:|   :..|..: .|:
  Fly   198 SEVENALQPIIFASKIRIYPYGQYDRTVCLRAEIVGCPWEEGIVSYSIPKG---VQRGMEV-DLS 258

Zfish   206 DSTYDGPLERRKLSGGLGQLADGVVGLDDFVESRQYRLWPGYDYVGWRND--GLGPGYVEMEFQF 268
            |.||||..:..:...|||||.||..|.|:| .:..:....||:::|||||  ||....||:.|:|
  Fly   259 DKTYDGNEQGDRYVDGLGQLVDGQKGKDNF-RTDIHGFGKGYEWIGWRNDTPGLLGKPVEIVFEF 322

Zfish   269 DRQRNFTSMKVHSNNMFSMGVKIFSSVSCVFKLHLISEWESEPVEFHTVIDDRNPSARYVTIPLK 333
            |..|||:::.:|:||||:..|::|......|.:. ...:..|||:|..:.|.....||.|||.|.
  Fly   323 DTVRNFSAIVLHTNNMFTKDVQVFVHAKVFFSIG-GRYFSGEPVQFSYMPDTIMDHARDVTIKLH 386

Zfish   334 HRSATALRCRFYFADTWMMFSEISFQSVTIVLPTKKPPVL--TPPSYEANSEIPETTQKTEDWTT 396
            ||....|:...|||..|:|.|||||.||         |.:  .....|..|..|...|...|.|.
  Fly   387 HRVGKYLKINLYFAVKWIMLSEISFISV---------PAMGNFTDEQEQRSNSPSQAQDVHDETN 442

Zfish   397 ----------PTKTG-------------------------------------SPEEGN-TSILIG 413
                      |...|                                     .|.:.| ..::|.
  Fly   443 GSEYQANRNKPNGVGGSAGGLGEGVAAAGGDIVGNNKYNNGPQLIAPRPIDQEPNDANFIGVVIV 507

Zfish   414 CLVTIILLLVVIIFLILWCQYVCKVLEKAPRRILEEEVAVRLSSSSDTI---ILQTPPVPPRVSI 475
            .|.|||:|||.||..|     |.:........:|:   |.:.|.:.:|:   :.:..|....:..
  Fly   508 VLTTIIILLVAIILFI-----VSRTKRARGSNVLD---AFQYSFNPNTLGGNVDKHRPNGNSIKA 564

Zfish   476 DPPYERIFLLDPQYQDP-------------AALR----NKLPELSQSAETSACSGGYAEPDVTLC 523
            :.........:..|.:|             ||:.    |..|:.:...|     ||||.|.:...
  Fly   565 NVDDNDSIGKNSLYHEPFNVNMYTCGVNGYAAVNDLQCNMTPDYTDVPE-----GGYAVPHMQDY 624

Zfish   524 TPHQSFQSSAP 534
            .|.......||
  Fly   625 MPSSKMGGGAP 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ddr2lXP_021327249.1 FA58C 25..176 CDD:238014 64/153 (42%)
PTKc_DDR_like 572..868 CDD:133228
smalNP_723165.2 FA58C 78..234 CDD:214572 65/156 (42%)
FA58C 81..233 CDD:238014 64/152 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 168 1.000 Domainoid score I3782
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 524 1.000 Inparanoid score I1210
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122892at33208
OrthoFinder 1 1.000 - - FOG0001292
OrthoInspector 1 1.000 - - mtm6449
orthoMCL 1 0.900 - - OOG6_103661
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X998
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.970

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