DRSC/TRiP Functional Genomics Resources

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Protein Alignment hmcn2 and side-VI

DIOPT Version :9

Sequence 1:XP_001920501.5 Gene:hmcn2 / 565032 ZFINID:ZDB-GENE-030131-9765 Length:4212 Species:Danio rerio
Sequence 2:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster


Alignment Length:1246 Identity:255/1246 - (20%)
Similarity:420/1246 - (33%) Gaps:370/1246 - (29%)


- Green bases have known domain annotations that are detailed below.


Zfish  2419 EARGVPPPTLSWLKDGQPLSLHRNLLLDGQETRFLLSDVGPSDAGLYSC-VASNQAGSSTKTFNL 2482
            :.||....|.|..:|.:.|..........:....:::.|...|||.:.| |....:.:.....||
  Fly    74 DTRGAHAGTPSHWRDEEVLEDRAVFRTHKEPAELIINPVKEKDAGNFRCRVDFKLSQTRNSNVNL 138

Zfish  2483 TVLEPPKITGSLSPEEQLIAVDS---------LLELECIA-TGLPPPTLSWLKDGRPIQDNMAII 2537
            .|:.||  |..:...|:.:.:||         .||:.|:. .|.||||:.||.:|: :|:::...
  Fly   139 EV
VVPP--TQPIIFNERRLRIDSRAGPYEEGGSLEVTCVVYGGSPPPTVIWLMNGQ-LQNSVVDY 200

Zfish  2538 ERDG----QLLRINKVQVEDAGLYTCLASS-PAGEDGRNHWVRVQLPPTLLGSNDIRTVSVPAKG 2597
            ..||    :|:..|..::....:|||.||: .......|..:.:.|.| ||.........:.|..
  Fly   201 TYDGAINSKLVVRNLSRIHQHAVYTCQASNFHKKYVATNITI
DLYLRP-LLVEISFNNQPMSADR 264

Zfish  2598 HLTLECQT-DSDPPPEIEWYKDNVKVQLGGRIQSIA-----SGQFLEIQDVRMHDSGQYSCVVTN 2656
            ...:|||. .|.||.:|.|:..|  ::|.|..|.::     |...|.|...|.......||..||
  Fly   265 KYEIECQAIGSRPPAKITWWMGN--LELHGHSQKVSEDGNVSTSVLSITPTREDHGKALSCRATN 327

Zfish  2657 ---------IAGSTSLFF--TVEILLPPVIREGSSLIIAHV--GQDAVLPCEVEGAPSS-SVMWR 2707
                     .|...::||  |:::.|      ||:|....:  |.|....|:|...|:: .|:| 
  Fly   328 ELVRNGIRETAMKLNVFFIPTLQLDL------GSNLNPEDIEEGDDVYFECKVHANPAAYKVVW- 385

Zfish  2708 KDGGPVPLHNNRF-TLLSEGSLRISTVQLSDVGRYYCSVSNQAG-SDHRGMDLKVYVGPSISPGP 2770
            |....:..||.|. .::|.|.|.:..|.....|.|.|:.||..| .|...::|||...|...|..
  Fly   386 KHNHQIIQHNQRAGVIVSSGDLALQGVTRHQAGNYTCTASNVEGDGDSNVVELKVMYKPICRPDQ 450

Zfish  2771 FNV-TVVTGQRAVLSCESTGIPAPQ-VSWRRNGSPISVDQ-SSAYRLMSS-GSLVITSPTAE-DE 2830
            ..: .|...:.|.:.||....|.|: ..|..|.:..:.|. .|.:|..|: ||.:..:|..| |.
  Fly   451 KKIYGVARNEAAEIVCEVDAFPPPENFKWSFNNTAETFDMPQSGFRPHSAQGSTLTYTPVKEMDF 515

Zfish  2831 GYFECTVTNEVGEERRVIEVILQVPPVIKDDVSSVTAVKMSPVVLPCHATGRPE-----PVISWN 2890
            |...|...|.||:::                         .|.|....|.|:||     .|::..
  Fly   516 GTIMCWADNNVGQQK-------------------------EPCVFHLIAAGKPEAPTNCTVVNQT 555

Zfish  2891 KNWMQL----GARGGSYRVLPTGALEILAATPSHAGKYTCSARNPVGVAYKHVTLTVQEPPEIRP 2951
            .:.:::    |..||..:..   .:||.   ..|:|:...:      ::.|...|:|        
  Fly   556 SDSLEVYCIEGFDGGMRQWF---LMEIF---DQHSGQLQAN------ISAKFAALSV-------- 600

Zfish  2952 MAEEVQVVLHHSVVLPCEVQGFPRPTITWQREGVPVATGHRLAVLS-NGALKFSRVTLGDAGTYQ 3015
                                           .|:......|:.|.: ||..:...:.|..   |.
  Fly   601 -------------------------------TGLDAGRLFRIYVYAVNGRGRSDAIALDG---YT 631

Zfish  3016 CLAQNEAGTAL------AQTQLILQVPPVLSVPRLEYVVVLGQPVSLDCVADG---QPKPEVTWH 3071
            ..|..:...||      ||:....::.|:||:.     :.:|..|::.|:..|   ..|.....|
  Fly   632 LKAAEKQTVALTSYKGSAQSPDNFELTPILSIG-----IFVGILVAIVCIGIGTIAALKLRSHKH 691

Zfish  3072 RDRRPVVDSSHLRLFSN-GSLHITATQRGDAGIYTCSARNSVG-RASHDVRLILHTPPQIFVGQS 3134
            :.::..|..:  ..||. |:|.|               ::.:. ..||...:.....|.: |..:
  Fly   692 QQQQKFVHPN--AKFSRPGNLQI---------------KDKISLPLSHSEEMYDEKNPDV-VPYN 738

Zfish  3135 EISVMQGLRVMLPCAAQGVPEPRMSWEKKGVSVSNMPGKFTLRESGGLIIERAEAGDAGLF---- 3195
            |:......:     :|...|...:|...: |.:|..||     .:.|..|.:|.:.|:|.:    
  Fly   739 EVDGEYKQK-----SATQTPSGHLSTTSE-VEISCKPG-----STSGTGIVQANSADSGTYQSSK 792

Zfish  3196 -----------TCVATNTAGSARWD--------IRLTV--------------------------N 3215
                       |.:.:.::|:::..        ::..|                          :
  Fly   793 DDELHYAELSLTNMPSGSSGASKKGQPMGGVGVVQHVVQQQQQQQQGQVQHPHQLLGGTLPHGSS 857

Zfish  3216 MRPAFKELPGDVTL-----NKGQSLSLSCHAEGTPTPTITWTANNRPYTGASVD-------ETGR 3268
            ||.....:|...||     |.|.......||   |.||..:.....|...|.:|       :|| 
  Fly   858 MRKLLPTIPATATLQRHKPNAGGMQHPHQHA---PPPTYDYDYFEEPTIYAQIDAYKTMQVDTG- 918

Zfish  3269 SSVIFDNVTVSDGGTYACIAENTVGLIRALSFVRVREPPVLRGEAHTSQTVIQGKSAMLDCAVSG 3333
                   |.|:..|..|....|..|       ..:..|    |...|..||..|...|.      
  Fly   919 -------VVVAGVGAGAGSGVNGAG-------ASISSP----GSHGTPSTVSPGTVQMY------ 959

Zfish  3334 DPVPSLRWHKDGQPLLGSLRFHPLRNGSLALYSAIIGDSGEYRCVAESEAGAAERTISLKVQVPG 3398
                :|..|..|        :|.|.:...|                             :.|:.|
  Fly   960 ----TLPQHPGG--------YHTLPHNHHA-----------------------------QQQMAG 983

Zfish  3399 GYSNWEEWGPCSVTCGQGIQERIRF--------CNNPPPAYGGPLCEGPNVDSRKCQASLCPGES 3455
            |..|       |.:..|.:|::.:.        .:|.||:|               |......:.
  Fly   984 GPQN-------SASMMQMMQQQQQQQQQMHHHPASNMPPSY---------------QQHQQQQQQ 1026

Zfish  3456 PRRARGSLIGMVNEKEFGVAYLEANIT--ENDLEGTSTLEAHVENIPPSVG-PLLRVLVSVFAPV 3517
            .:.|.|.:  :|:....|:|...|.:.  .:.|.|.|           .|| ...|.:|:|..|:
  Fly  1027 QQMAHGQM--LVSSNSSGLASTTAAVASPSSSLSGLS-----------GVGKSYSREIVTVRTPL 1078

Zfish  3518 YWTTVYQTQET 3528
                :|..||:
  Fly  1079 ----MYSQQES 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hmcn2XP_001920501.5 VWA_2 38..208 CDD:290253
IG 441..512 CDD:214652
Ig 441..502 CDD:299845
I-set 516..603 CDD:254352
Ig 533..600 CDD:143165
IG 613..691 CDD:214652
Ig 624..690 CDD:143165
IG 710..784 CDD:214652
Ig 714..781 CDD:143165
IG 794..879 CDD:214652
Ig 794..879 CDD:299845
I-set 885..972 CDD:254352
Ig 904..972 CDD:299845
IG_like 982..1063 CDD:214653
IGc2 989..1053 CDD:197706
IG_like 1083..1159 CDD:214653
Ig 1089..1156 CDD:143165
I-set 1163..1241 CDD:254352
IGc2 1176..1231 CDD:197706
Ig 1244..1327 CDD:299845
IG_like 1258..1335 CDD:214653
Ig 1338..1430 CDD:299845
I-set 1344..1428 CDD:254352
IG_like 1441..1523 CDD:214653
IGc2 1448..1513 CDD:197706
IG_like 1536..1616 CDD:214653
IGc2 1545..1606 CDD:197706
IG_like 1638..1714 CDD:214653
Ig 1644..1711 CDD:143165
IG_like 1753..1830 CDD:214653
Ig 1760..1822 CDD:143165
I-set 1834..1918 CDD:254352
Ig 1851..1925 CDD:299845
IG_like 1937..2017 CDD:214653
IGc2 1943..2007 CDD:197706
IG_like 2031..2110 CDD:214653
IGc2 2039..2100 CDD:197706
I-set 2114..2202 CDD:254352
IGc2 2129..2192 CDD:197706
IG 2214..2295 CDD:214652
IGc2 2222..2287 CDD:197706
I-set 2307..2391 CDD:254352
IGc2 2321..2381 CDD:197706
I-set 2400..2484 CDD:254352 14/65 (22%)
IGc2 2410..2474 CDD:197706 12/55 (22%)
IG_like 2496..2576 CDD:214653 25/94 (27%)
IGc2 2507..2566 CDD:197706 21/64 (33%)
IG 2589..2669 CDD:214652 25/96 (26%)
IGc2 2597..2659 CDD:197706 20/76 (26%)
IG 2679..2760 CDD:214652 25/85 (29%)
IGc2 2687..2750 CDD:197706 20/64 (31%)
I-set 2764..2851 CDD:254352 24/91 (26%)
Ig 2770..2845 CDD:299845 22/79 (28%)
IG 2863..2943 CDD:214652 16/88 (18%)
Ig 2873..2942 CDD:299845 14/77 (18%)
IG_like 2954..3032 CDD:214653 12/84 (14%)
IGc2 2963..3023 CDD:197706 8/60 (13%)
IG_like 3046..3122 CDD:214653 14/80 (18%)
IGc2 3051..3113 CDD:197706 12/65 (18%)
IG_like 3133..3214 CDD:214653 15/103 (15%)
Ig 3144..3213 CDD:299845 14/91 (15%)
IG 3224..3303 CDD:214652 21/90 (23%)
IGc2 3232..3293 CDD:197706 16/67 (24%)
IG_like 3316..3394 CDD:214653 10/77 (13%)
IGc2 3321..3384 CDD:197706 8/62 (13%)
TSP1 3401..3452 CDD:214559 9/58 (16%)
G2F 3455..3636 CDD:284812 18/77 (23%)
EGF_CA 3691..3721 CDD:214542
Furin-like 3728..3857 CDD:279142
EGF_CA 3731..3774 CDD:284955
EGF_CA 3776..3814 CDD:214542
EGF_CA 3816..3849 CDD:238011
EGF_CA 3858..3899 CDD:284955
EGF_CA 3901..3940 CDD:214542
EGF_CA 4005..4044 CDD:214542
EGF_CA 4045..4085 CDD:214542
side-VINP_001036705.1 IG_like 35..140 CDD:214653 14/65 (22%)
Ig_3 157..230 CDD:290638 22/73 (30%)
IG_like 165..242 CDD:214653 22/77 (29%)
Ig 265..343 CDD:299845 21/79 (27%)
IG_like 267..343 CDD:214653 21/77 (27%)
IG_like 363..440 CDD:214653 23/77 (30%)
IGc2 364..429 CDD:197706 20/65 (31%)
IG_like 456..532 CDD:214653 22/100 (22%)
Ig_3 456..524 CDD:290638 19/67 (28%)
fn3 545..622 CDD:278470 16/127 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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