DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lrrc4cb and Fili

DIOPT Version :9

Sequence 1:XP_005166545.1 Gene:lrrc4cb / 564462 ZFINID:ZDB-GENE-080327-5 Length:631 Species:Danio rerio
Sequence 2:NP_001369108.1 Gene:Fili / 5740472 FlyBaseID:FBgn0085397 Length:789 Species:Drosophila melanogaster


Alignment Length:727 Identity:164/727 - (22%)
Similarity:261/727 - (35%) Gaps:229/727 - (31%)


- Green bases have known domain annotations that are detailed below.


Zfish    29 LLLLALQLLVVAGLVRAQTCPSVCSC--SNQFSKVICTRRGLKDVPDGVSTNTRYLNLQDNQIQV 91
            :|||.|..||:........|||.|.|  ....|:.:|....|:|||..::..|:|:||..|:|:.
  Fly    23 VLLLLLLTLVILPPETTAFCPSKCQCLGGEANSRALCVDAALEDVPIQLNPETKYINLTVNRIRT 87

Zfish    92 IKVD-----------------------SFKHLRHLEILQLSRNHIRNIEIGAFNGLTSLNTLELF 133
            ::..                       :|::...|..|.||||.:.::...||.|||:|..|:|.
  Fly    88 LEFSLPFYMKLEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLS 152

Zfish   134 DNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSDAFS------------------------RLPS 174
            .||:.|:...|...|:.|.||.|.||.|.|:..:.|.                        .|.:
  Fly   153 FNRIETVHPTALSDLASLVELDLTNNNIVSLEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLHA 217

Zfish   175 LRRLDLG-------------ELKRL----------SYISSGAFQGLSNLRYLNLGMCNLKEVP-- 214
            |:.||:.             .||.|          |.:...||:||.:|::|:|...||..||  
  Fly   218 LKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDNNLTMVPTQ 282

Zfish   215 NIQPLIRLDELEMSGNQLTVIQPSSFKGLVHLQKLWMMHAQ-VQTIERNSFDDLHSLRELNLAHN 278
            .:..|..|..|.:.||:.:.:...:|..|.||::|.:.... :|.|:..:|.|...|:.|:|.:|
  Fly   283 QLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDNTHLQTLHLNNN 347

Zfish   279 -NLTFLPHDLYT-----------------------PLHHLQRVHLHHNPWNCNCDILWLSWWLRE 319
             .|:.:|..|:.                       |:..||:::|..||..|||.:||| |.|  
  Fly   348 PQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNPLQCNCSLLWL-WRL-- 409

Zfish   320 TVPTNTSCCARCNSPPSLKGRYIGELDQSYFQCYAPVIIEPPVDLNLTEGMAA--------ELKC 376
                             :.|.:.|              ::|.::......:||        ||..
  Fly   410 -----------------VTGNFEG--------------VDPGMEHAAGGAVAALAKEADDEELAD 443

Zfish   377 RTNSVTSVSWLTPNGSIITHGTLKMRINVQNDGTLNFTNVTLQDTGTYTCYVSNMLGNTSASAIL 441
            ...:|.|.                      :||.........:.      ::.|.|..|..||..
  Fly   444 EATAVAST----------------------DDGVAALAAYIAEQ------HIVNALHTTEPSAYE 480

Zfish   442 NVTSVDNSGFSYFTTVTVETIETPIDGESRTPVQPSFGWASSSTTRGTPIA-TERAYTIPVTEID 505
            ..||..|.. |....:..:.|...|             |.....||...:. :|...|.|.    
  Fly   481 LATSSSNRN-SGILRMDRQQIGCDI-------------WRDKVRTRRKLLTMSEGEITCPA---- 527

Zfish   506 IDGALNGLEEVMKTTKIIIGCFVAITLMAAVMLIIFYKMR--KQHHQQDHD-GPSR-SMEIISVH 566
                     .::.....:|.|.    |:|.:.:.:.|.:|  |:..:..|: ||.| |..||:||
  Fly   528 ---------HIVTVVCAVITCL----LVAMIGISVLYYLRFVKRRRKLLHERGPMRTSKSIINVH 579

Zfish   567 EDLTRVPAMESH----------LTLPPLEHDHYNHYNSYKTAYN---HVSALSSLHSSVHEPLLI 618
            :.:     ::.|          :||     ...||.|......|   |...|.: |...|:.:.:
  Fly   580 DRI-----LQGHNPGGLGLGMSMTL-----GGGNHVNGLGMTLNYPHHAQTLQA-HHHYHQAMPL 633

Zfish   619 QASSKDNVQETQ 630
            |:...:...|.|
  Fly   634 QSHGGNGNHEYQ 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lrrc4cbXP_005166545.1 LRRNT 48..81 CDD:214470 12/34 (35%)
LRR_8 77..137 CDD:290566 22/82 (27%)
leucine-rich repeat 79..102 CDD:275380 7/45 (16%)
LRR_RI 82..>281 CDD:238064 70/272 (26%)
leucine-rich repeat 103..126 CDD:275380 10/22 (45%)
LRR_8 125..180 CDD:290566 21/78 (27%)
leucine-rich repeat 127..150 CDD:275380 8/22 (36%)
leucine-rich repeat 151..174 CDD:275380 10/46 (22%)
leucine-rich repeat 175..199 CDD:275380 11/46 (24%)
leucine-rich repeat 200..221 CDD:275380 8/22 (36%)
LRR_8 221..280 CDD:290566 17/60 (28%)
leucine-rich repeat 222..245 CDD:275380 6/22 (27%)
leucine-rich repeat 246..269 CDD:275380 6/23 (26%)
leucine-rich repeat 270..291 CDD:275380 7/44 (16%)
LRRCT 302..352 CDD:214507 12/49 (24%)
I-set 355..443 CDD:254352 14/95 (15%)
Ig 372..439 CDD:143165 10/74 (14%)
FiliNP_001369108.1 leucine-rich repeat 75..97 CDD:275378 6/21 (29%)
leucine-rich repeat 98..121 CDD:275380 1/22 (5%)
LRR_8 120..180 CDD:404697 25/59 (42%)
leucine-rich repeat 122..145 CDD:275380 10/22 (45%)
leucine-rich repeat 146..169 CDD:275380 8/22 (36%)
LRR <161..>354 CDD:227223 49/192 (26%)
leucine-rich repeat 170..193 CDD:275380 9/22 (41%)
leucine-rich repeat 194..217 CDD:275380 1/22 (5%)
leucine-rich repeat 218..265 CDD:275380 11/46 (24%)
leucine-rich repeat 266..289 CDD:275380 8/22 (36%)
leucine-rich repeat 290..313 CDD:275380 6/22 (27%)
leucine-rich repeat 314..338 CDD:275380 6/23 (26%)
LRR_8 337..397 CDD:404697 12/59 (20%)
leucine-rich repeat 339..360 CDD:275380 7/20 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.