Sequence 1: | XP_005166545.1 | Gene: | lrrc4cb / 564462 | ZFINID: | ZDB-GENE-080327-5 | Length: | 631 | Species: | Danio rerio |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001369108.1 | Gene: | Fili / 5740472 | FlyBaseID: | FBgn0085397 | Length: | 789 | Species: | Drosophila melanogaster |
Alignment Length: | 727 | Identity: | 164/727 - (22%) |
---|---|---|---|
Similarity: | 261/727 - (35%) | Gaps: | 229/727 - (31%) |
- Green bases have known domain annotations that are detailed below.
Zfish 29 LLLLALQLLVVAGLVRAQTCPSVCSC--SNQFSKVICTRRGLKDVPDGVSTNTRYLNLQDNQIQV 91
Zfish 92 IKVD-----------------------SFKHLRHLEILQLSRNHIRNIEIGAFNGLTSLNTLELF 133
Zfish 134 DNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSDAFS------------------------RLPS 174
Zfish 175 LRRLDLG-------------ELKRL----------SYISSGAFQGLSNLRYLNLGMCNLKEVP-- 214
Zfish 215 NIQPLIRLDELEMSGNQLTVIQPSSFKGLVHLQKLWMMHAQ-VQTIERNSFDDLHSLRELNLAHN 278
Zfish 279 -NLTFLPHDLYT-----------------------PLHHLQRVHLHHNPWNCNCDILWLSWWLRE 319
Zfish 320 TVPTNTSCCARCNSPPSLKGRYIGELDQSYFQCYAPVIIEPPVDLNLTEGMAA--------ELKC 376
Zfish 377 RTNSVTSVSWLTPNGSIITHGTLKMRINVQNDGTLNFTNVTLQDTGTYTCYVSNMLGNTSASAIL 441
Zfish 442 NVTSVDNSGFSYFTTVTVETIETPIDGESRTPVQPSFGWASSSTTRGTPIA-TERAYTIPVTEID 505
Zfish 506 IDGALNGLEEVMKTTKIIIGCFVAITLMAAVMLIIFYKMR--KQHHQQDHD-GPSR-SMEIISVH 566
Zfish 567 EDLTRVPAMESH----------LTLPPLEHDHYNHYNSYKTAYN---HVSALSSLHSSVHEPLLI 618
Zfish 619 QASSKDNVQETQ 630 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lrrc4cb | XP_005166545.1 | LRRNT | 48..81 | CDD:214470 | 12/34 (35%) |
LRR_8 | 77..137 | CDD:290566 | 22/82 (27%) | ||
leucine-rich repeat | 79..102 | CDD:275380 | 7/45 (16%) | ||
LRR_RI | 82..>281 | CDD:238064 | 70/272 (26%) | ||
leucine-rich repeat | 103..126 | CDD:275380 | 10/22 (45%) | ||
LRR_8 | 125..180 | CDD:290566 | 21/78 (27%) | ||
leucine-rich repeat | 127..150 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 151..174 | CDD:275380 | 10/46 (22%) | ||
leucine-rich repeat | 175..199 | CDD:275380 | 11/46 (24%) | ||
leucine-rich repeat | 200..221 | CDD:275380 | 8/22 (36%) | ||
LRR_8 | 221..280 | CDD:290566 | 17/60 (28%) | ||
leucine-rich repeat | 222..245 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 246..269 | CDD:275380 | 6/23 (26%) | ||
leucine-rich repeat | 270..291 | CDD:275380 | 7/44 (16%) | ||
LRRCT | 302..352 | CDD:214507 | 12/49 (24%) | ||
I-set | 355..443 | CDD:254352 | 14/95 (15%) | ||
Ig | 372..439 | CDD:143165 | 10/74 (14%) | ||
Fili | NP_001369108.1 | leucine-rich repeat | 75..97 | CDD:275378 | 6/21 (29%) |
leucine-rich repeat | 98..121 | CDD:275380 | 1/22 (5%) | ||
LRR_8 | 120..180 | CDD:404697 | 25/59 (42%) | ||
leucine-rich repeat | 122..145 | CDD:275380 | 10/22 (45%) | ||
leucine-rich repeat | 146..169 | CDD:275380 | 8/22 (36%) | ||
LRR | <161..>354 | CDD:227223 | 49/192 (26%) | ||
leucine-rich repeat | 170..193 | CDD:275380 | 9/22 (41%) | ||
leucine-rich repeat | 194..217 | CDD:275380 | 1/22 (5%) | ||
leucine-rich repeat | 218..265 | CDD:275380 | 11/46 (24%) | ||
leucine-rich repeat | 266..289 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 290..313 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 314..338 | CDD:275380 | 6/23 (26%) | ||
LRR_8 | 337..397 | CDD:404697 | 12/59 (20%) | ||
leucine-rich repeat | 339..360 | CDD:275380 | 7/20 (35%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |