DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment si:rp71-39b20.4 and Shawl

DIOPT Version :9

Sequence 1:XP_005171298.1 Gene:si:rp71-39b20.4 / 563472 ZFINID:ZDB-GENE-070912-704 Length:539 Species:Danio rerio
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:560 Identity:128/560 - (22%)
Similarity:217/560 - (38%) Gaps:173/560 - (30%)


- Green bases have known domain annotations that are detailed below.


Zfish    90 INVNVGGKVFTIPKHLAVRYPKTRIGSL--ALCK-DPIKQLNLCDDYCVLTNEFFFDRDPTFFHY 151
            |.:||.|..:...|....:.|.||:..|  ||.. ||:            .||:||||.|..|..
  Fly     7 IILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPV------------LNEYFFDRHPGVFTQ 59

Zfish   152 IFHFYCSNVLWVMESLCPVNFEEEMQFWGLHLRDSPRCCRILYEEKID-----EIRDQLKVNREL 211
            |.::|.:..|.....:|...||||::||||.......||...|....|     .|.|:|.:..| 
  Fly    60 ILNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENE- 123

Zfish   212 MAEIEPRHSEE------GF-KSMFLGD------VRKVLWDLIENPYSSMSAKAFAVFSSLFVLIS 263
                  :.:||      || :::..|:      ::..:|.:.:.|.||..||..|..|..|:.:|
  Fly   124 ------KPTEEQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVS 182

Zfish   264 IVAMTLNT--------------------------------------------------------- 271
            :::..|.|                                                         
  Fly   183 VISFCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRV 247

Zfish   272 ---------------------------------------VSELKDYKVYG----------RTYME 287
                                                   ::|..:.|:.|          .||.:
  Fly   248 TNYTSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQ 312

Zfish   288 ------CVEITSILFFTFEYFLRLLTTCDIKHFLKSALNFVDLVAVMPYFIQLVFEAFADQEDVS 346
                  .||:...::|..|..:||:.:.::..|:||.:|.:|..|.:.::..:            
  Fly   313 PHEAFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTDV------------ 365

Zfish   347 VQDDLKTMARVSKVSKILKVVKLMRIFRILKLARHSTGMRAFGFTLRQCFEQVCCLFLFIIMGIF 411
                   |.|:.:.:.:|:...::||.|:.||.|||.|:|....|.:...:::..|..|:::||.
  Fly   366 -------MQRMGEYTGLLEAFSIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIV 423

Zfish   412 TFSALMHSVE--QDVAGTPFSSIPDAWWWAAVSISTVGYGDVVPISYSGRVVAFGCISFGIILNG 474
            .|::|.:..|  ||.....|.|||...|||.|:::|||||||.|.:|.|..|...|...|::...
  Fly   424 FFASLAYYAEKLQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIA 488

Zfish   475 MPISILFNKFSDYYAKLKAQECTNTNIQRGLNLKKRLRKK 514
            :|:.::.:.||.:|:..:|:.......:|.|.:::..||:
  Fly   489 LPVPVIVSNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKR 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
si:rp71-39b20.4XP_005171298.1 BTB 90..181 CDD:295341 31/93 (33%)
Ion_trans 287..492 CDD:278921 60/212 (28%)
Ion_trans_2 405..486 CDD:285168 31/82 (38%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 34/103 (33%)
BTB_2 7..97 CDD:280393 33/101 (33%)
Ion_trans 307..506 CDD:278921 62/217 (29%)
Ion_trans_2 <449..499 CDD:285168 18/49 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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