DRSC/TRiP Functional Genomics Resources

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Protein Alignment vps41 and lt

DIOPT Version :9

Sequence 1:XP_691671.2 Gene:vps41 / 563215 ZFINID:ZDB-GENE-030131-6671 Length:854 Species:Danio rerio
Sequence 2:NP_001036415.2 Gene:lt / 3355130 FlyBaseID:FBgn0002566 Length:841 Species:Drosophila melanogaster


Alignment Length:849 Identity:325/849 - (38%)
Similarity:495/849 - (58%) Gaps:56/849 - (6%)


- Green bases have known domain annotations that are detailed below.


Zfish    17 DESEEEDTEEEPKLKYERLTNGVTEILQKDAASCMTVHDKFLALGTHFGKVFLLDIQGN-VTQKF 80
            |...|||.  |||.||.||.|.:..:|..|..:|..||.|||..||..|:|.:.|.||| |....
  Fly    15 DSINEEDV--EPKFKYHRLANDLKYMLNADVITCSAVHLKFLIFGTFRGRVCIFDHQGNSVYSNL 77

Zfish    81 EIS-----SVKINQISLDESGDHVGICSEDGKVQVFGLYTREGFHE-NFDCPIKVVALHPQFSKS 139
            ..|     .|.:|.|.:|..|::|..||:||||.:.||::.:..|. :|...||||:|.|. ||:
  Fly    78 SASERHTHQVAVNNIDVDHKGEYVATCSDDGKVNITGLFSSDNNHSLSFGKFIKVVSLEPD-SKA 141

Zfish   140 NNKQFVTGGNKLLLYERNWLNRWKTSVLHEGEGNITSVKWRGNLIAWANNVGVKIYDIGSK---- 200
            :.|:||.|.:||:|||||.|.:.|...|...||::.|:.|.||.||||:::||::||:..:    
  Fly   142 HIKRFVVGDDKLILYERNLLKKLKPVELCSVEGSVLSICWHGNFIAWASHIGVRVYDLNERCSLG 206

Zfish   201 ---------QRITNVLRDNTSLRPDMYPCSLCWKDNTTLIIGWGCSVKICAVKERDPTEMR--DL 254
                     :|:.|            :.|.|.|.:..||:|||..::::|.:::|:..|..  :|
  Fly   207 LIKWEVPPQERLEN------------FRCHLRWSNKHTLLIGWVDTIRVCVIRKRNSIEASTGNL 259

Zfish   255 PSRYVEIVSAFETEFFISGLAPL-ADQLVTLYYVKENSDHMEEEFRTRPRLDIIQPLPEGCEEIS 318
            |...|:.:|.|:|.|::.||||| |.|||.|.:.||.|...:   ..||.|.:|:......|||.
  Fly   260 PVYIVDPISTFQTTFYVCGLAPLSAKQLVVLGFRKEKSSCFK---ALRPVLCVIEYKMNNSEEIC 321

Zfish   319 SDALTVRNFQENQCRDYRLEHSEGESLFYIISPKDIVVAKERDQDDHIDWLLEKKKYEEALMAAE 383
            :|:||:|.|:|....||.|.....|:.|||::|||||||...:.||.|:||::..|:|||:....
  Fly   322 TDSLTLRGFEEYTVNDYSLGGIIEENRFYIVAPKDIVVASLIETDDRIEWLIKHSKFEEAMELIS 386

Zfish   384 ISFKNIKRHDVQKIGMAYINHLVEKGDYDTAARKCQKVLGKNMDLWENEVYRFKTIGQLKAISQY 448
            .:..|:....|.|:   |||||:....||.||:.|.::||.:..|||.||::|....||:::|.|
  Fly   387 ANGGNVPVLSVAKL---YINHLLALKKYDDAAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAY 448

Zfish   449 LPRGD-LRLRPAIYEMILHDFLKTDYEGFATLIREWPGELYNNMAIVQAVNEHLKKDPTNSILLT 512
            ||..| .:|.|.:|||:|::|||.|..||..||:|||..||:.:|::.|::::.:|...|. ||.
  Fly   449 LPTSDECKLDPHVYEMVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHDNFRKHYANQ-LLE 512

Zfish   513 TLAELYTYDQRYDRALEIYLRLRHKDVYQLIHKHNLFSSIKDKIVLLMDFDKEKAVDMLLDNEDK 577
            :||.||:|...::.||.:||:|::|||:|||.::.|:..|...|:.|:..|::.|.::|||.: |
  Fly   513 SLALLYSYQGDFESALRMYLKLQNKDVFQLIRRYELYDVISKLIIPLIQLDRDCAFEILLDKK-K 576

Zfish   578 ISMDKVVEELKDRPELLHVYLHKLFKRDHHKGQKYHERQISLYAEFDRPNLLPFLRESMHCPLEK 642
            |..:.||.:|:...|.|:.||..|.|:|  ....:.::.|||||.|||..|||||:.|....:::
  Fly   577 IKTEIVVHQLEHNQEYLYWYLDSLLKKD--PSNVFQKKLISLYAIFDRNKLLPFLKRSKDYDIQE 639

Zfish   643 ALEICQQRHFVEETVFLLSRMG--NCRRALQMIMEELANVDKAIEFAKEQDDRELWEDLISYSID 705
            ||.||:|.:|..|.|:||..||  ....||.:|:..:.:::.||||.||.||.:||..||:....
  Fly   640 ALVICKQENFYPEIVYLLGCMGGVEASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALINEFSK 704

Zfish   706 KPPFITGLLNNIGTHVDPILLIHRIKEGMEIPNLRDSLVKILHDYNLQILLREGCKKILVADSLS 770
            .|..:|.:|:.|..:..|.:::.:||.|..|||||.||:|:|..||||..:....::|.:.|...
  Fly   705 HPEIVTKVLDGIVDYFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGEILSSAQQIQLNDYFE 769

Zfish   771 LLQRMHRTQKKGVRVDEENICESCHTPILPSDTAQAFGVVVFHCRHMFHKECLPSPGSIPGIQYC 835
            :...:..||::|.:|..|.:|..||.|:|.:.| ..:.::...|.|::||.|:  .|.:  ::.|
  Fly   770 IHSEIVTTQRRGQQVSYEQLCSLCHRPVLMAGT-HLYCIIRLECGHVYHKPCI--QGEL--LKNC 829

Zfish   836 NICS 839
            |.|:
  Fly   830 NECN 833

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vps41XP_691671.2 WD40 <44..215 CDD:225201 71/190 (37%)
WD40 repeat 82..131 CDD:293791 20/54 (37%)
WD40 repeat 137..169 CDD:293791 16/31 (52%)
WD40 repeat 174..210 CDD:293791 14/48 (29%)
TPR 328..589 CDD:223533 107/261 (41%)
CLH 571..708 CDD:128594 56/138 (41%)
Clathrin 575..710 CDD:279031 54/136 (40%)
Vps39_2 713..814 CDD:287353 32/100 (32%)
ltNP_001036415.2 WD40 repeat 33..81 CDD:293791 18/47 (38%)
WD40 <42..204 CDD:295369 69/162 (43%)
WD40 repeat 90..123 CDD:293791 13/32 (41%)
WD40 repeat 130..168 CDD:293791 21/38 (55%)
CLH 570..707 CDD:128594 56/139 (40%)
Clathrin 580..708 CDD:279031 52/129 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596143
Domainoid 1 1.000 396 1.000 Domainoid score I722
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69165
Inparanoid 1 1.050 563 1.000 Inparanoid score I1045
OMA 1 1.010 - - QHG54432
OrthoDB 1 1.010 - - D103854at33208
OrthoFinder 1 1.000 - - FOG0004492
OrthoInspector 1 1.000 - - oto40530
orthoMCL 1 0.900 - - OOG6_103391
Panther 1 1.100 - - LDO PTHR12616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3779
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.910

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