DRSC/TRiP Functional Genomics Resources

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Protein Alignment CRTAM and nrm

DIOPT Version :9

Sequence 1:NP_062550.2 Gene:CRTAM / 56253 HGNCID:24313 Length:393 Species:Homo sapiens
Sequence 2:NP_001246890.1 Gene:nrm / 40515 FlyBaseID:FBgn0262509 Length:2192 Species:Drosophila melanogaster


Alignment Length:488 Identity:93/488 - (19%)
Similarity:171/488 - (35%) Gaps:129/488 - (26%)


- Green bases have known domain annotations that are detailed below.


Human     6 LSLLAWFPLQEASLTNHTETITVEEGQTLTLKCVTSLRKNS---SLQW-----------LTPSGF 56
            |.|:....|.::|......||:.:|.|::.|.|.....|..   ||.|           |..|..
  Fly    29 LVLVLCLALVDSSTAQVDTTISQQESQSVVLPCPVDAEKCGKLHSLNWFKGDDRIAAMLLGDSNV 93

Human    57 TIFLNEYP---ALKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC-------LHYSDSVSTKEVK 111
            |....|:.   .::.:.|:|:          :.::.:.||.:|.|       ....|:.:...::
  Fly    94 TSVNKEFDERVTVEQNPYRLV----------IKDLKIADEDIYLCDTTFFIPEETCDNFNGYRIE 148

Human   112 VIVLATPFK-PILEASVIRKQNG--------EEHVVLMCSTMRSKPPPQITWLLGNSMEVSGGTL 167
            :.||..|.: .||:|...|.:||        .:.:...|:...::|.|:::|..|.....:....
  Fly   149 LRVLVPPTEVVILDAKGDRIKNGSVVGPMQERQSLKATCTVRNTRPQPEVSWFRGTKRLTTYSPT 213

Human   168 HEFETDGK--------------------KCNTTSTLIIHTYGKNSTVDCIIR----------HRG 202
            |:. .||.                    :|...|..|.:......:||..:|          |..
  Fly   214 HDL-VDGLYTSTLELDWTLSREDLAQDIECRVKSAAIQNVTVTKFSVDLQVRPTSIDINGVKHHT 277

Human   203 LQGRKLVAPFRFEDLVTDEETASDALERNSLSSQDPQQPTSTVSVTEDSSTSEIDKEEKEQT--- 264
            :||.|:|       |..|...|..|:.....:       |:|:..:.::..:|:..:..|::   
  Fly   278 VQGSKVV-------LTCDIHGARPAVNLTWYN-------TTTIISSGENEITEVRSKSLEKSDGT 328

Human   265 --TQ------------DPDLTTEANPQYLGLARKK---SGILLLTLVSFLI------------FI 300
              ||            |.....||....|.:.|:|   |.:.|..|...::            .|
  Fly   329 FHTQSELIFNATRFENDRVFRCEAENIVLQINREKPISSALTLEVLYPPVVKVSPSAITANTSEI 393

Human   301 LFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEET-----SSEEKNGQSSHPMRCMNY 360
            :.:..:.|........|.|.: |::..:..::...:..|.|.     .|.||....::..:..|.
  Fly   394 VLLNCEYFANPASLTQVEWYR-NDILVNVNDTTHYKGGNSENVALVIKSTEKEDIGNYSCQLSNN 457

Human   361 ITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV 393
            |.|..|:.|...  :||::...| .:.:||..|
  Fly   458 IGKGTSDQKINL--DVQYAPTVE-ILMIPEGPV 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CRTAMNP_062550.2 Ig 20..114 CDD:299845 21/117 (18%)
IG_like 24..114 CDD:214653 21/113 (19%)
Ig 121..207 CDD:299845 23/123 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 225..273 8/64 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 328..354 5/30 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 374..393 5/18 (28%)
PDZ-binding. /evidence=ECO:0000250|UniProtKB:Q149L7 390..393 1/2 (50%)
nrmNP_001246890.1 Ig 44..152 CDD:299845 21/117 (18%)
Ig 176..248 CDD:299845 10/72 (14%)
Ig 277..354 CDD:299845 17/90 (19%)
IG_like 383..463 CDD:214653 13/80 (16%)
Ig 394..463 CDD:143165 12/69 (17%)
Ig_3 585..652 CDD:290638
Ig 685..>719 CDD:299845
IG_like 788..869 CDD:214653
Ig <811..869 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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