DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv2ca and CG33233

DIOPT Version :9

Sequence 1:NP_001121811.1 Gene:sv2ca / 562345 ZFINID:ZDB-GENE-060526-233 Length:745 Species:Danio rerio
Sequence 2:NP_995978.2 Gene:CG33233 / 2769005 FlyBaseID:FBgn0053233 Length:489 Species:Drosophila melanogaster


Alignment Length:593 Identity:117/593 - (19%)
Similarity:218/593 - (36%) Gaps:149/593 - (25%)


- Green bases have known domain annotations that are detailed below.


Zfish   137 AQQYELIIQECGHGRFQWQLFFTLGLALMSDGVEVFVVGF--VLPSAETDMCVPDSSSGWLGSIV 199
            |...:..:...|:|..|..:|.......|....|....|:  ||.|.|.|....:.:  .|.:.:
  Fly     3 AMDVDTALLTIGYGLGQVIIFMVSFFIYMYSVTESMTAGYLVVLTSCEFDTSPKEKT--LLANSL 65

Zfish   200 YLGMMVGAFFWGGMADKVGRRQCLLICMSLNGFFAF--LSSFVQGYGLFLLCRMIAGFGIGGAVP 262
            ..||:....|.|.:||:.||:  .:|.::|.|..:|  :|:.:.......:.|:|.|..:.....
  Fly    66 LGGMVASGLFIGFLADRYGRK--FVIRLALVGALSFSVISALMPDLYSLSVIRIIVGTFLSAVAS 128

Zfish   263 IVFSYFAEVLAREKRGEHLSWLCMFWMIGEIYASAMAWAIIPHYGQITTASSQFINYHHYTSWSF 327
            :...:..|..|.:.|...::.......:..||...:|.||:|:                  :::.
  Fly   129 LQVGFLGEFHAIKWRPITVAICSQSQGLALIYCPLVAMAILPN------------------NFNV 175

Zfish   328 SMGSAYQFHSWRVFVVVCALPCVCAVVALTFMPESPRFYLEVGKHDEAWMILKQIHDTNMRARGQ 392
            .:.|:|....||..::...:|...|:|.:..:||:|.|.:.|.:.|:|.:.||.|...|   |.:
  Fly   176 DLSSSYNLRVWRFLMMFFMIPGWLALVGICLVPETPHFLMSVNRPDKALLALKWICRMN---RKK 237

Zfish   393 PEKV-FTVNRIKIPKQIDEFVEMHESGNFFSKAIFRIKTELHGIWLNFLKCFNYPVKESTVKLAI 456
            .|.| .|::        :|....::...|:       ||    :|..:...|:.|    .|....
  Fly   238 WEDVDITLS--------EEKSSTNDQEGFW-------KT----VWYEYKLLFSKP----HVFKFF 279

Zfish   457 VWLTLSFGYY----GLSVWFPDVIKHLQNDEYASKGQRHNNERIEDFTFNFTLENQIHTNSLFIN 517
            :.|.|.||.:    ||.:||| ||:::.|.         .:.|:.|.         ::.|..|||
  Fly   280 ICLFLIFGIFFTSIGLGIWFP-VIRNMDNS---------GSNRLCDL---------VNNNPTFIN 325

Zfish   518 DRFINMKFKSVTFINSTFQSCFFEDVTSVGSFFRNCTFIEAVFYNTDIDDSKLKN--TDVINSTF 580
            ..                     .|.|:                .||.:..|..:  |::|:..:
  Fly   326 HE---------------------ADDTN----------------GTDSESPKCNDEMTNLIDPVY 353

Zfish   581 Y-HNKTGCQMTFEDDYSAYWVYFVNFLGTLAVLPGNIVSALLMDKIGRLSMLGFSMILS---GIS 641
            | ....||                           .|::::|:..:.|..::...:::|   |||
  Fly   354 YGFTYIGC---------------------------FILASVLVHWMTRKYVIALHILISMILGIS 391

Zfish   642 CFFLWFGTSESMMIGMLCLYNGLSISAWNSLDVVTTELYPTDRRGTGFGFCNALCKLAAVMGNLI 706
            ...:...|...:...::.:..|:.|....|   |..:..|.:.||.......:|.:...|:|:.:
  Fly   392 LNIMKQPTVVLIFFVLMMVLPGVLIPLATS---VLVDCLPVNLRGKALCMVRSLARFGGVLGSTM 453

Zfish   707 FGSLVGIT 714
            .|..:.:|
  Fly   454 IGLFIRVT 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sv2caNP_001121811.1 synapt_SV2 3..745 CDD:130366 117/593 (20%)
Spt5_N 73..>141 CDD:288770 1/3 (33%)
MFS 157..>360 CDD:119392 42/206 (20%)
MFS 588..>711 CDD:119392 19/125 (15%)
CG33233NP_995978.2 MFS_1 22..451 CDD:284993 110/562 (20%)
MFS 23..>208 CDD:119392 42/206 (20%)
MFS 354..>482 CDD:304372 23/138 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D724235at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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