DRSC/TRiP Functional Genomics Resources

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Protein Alignment pkp4 and p120ctn

DIOPT Version :9

Sequence 1:XP_690071.3 Gene:pkp4 / 561566 ZFINID:ZDB-GENE-120411-14 Length:1136 Species:Danio rerio
Sequence 2:NP_001036444.1 Gene:p120ctn / 3355143 FlyBaseID:FBgn0260799 Length:781 Species:Drosophila melanogaster


Alignment Length:824 Identity:307/824 - (37%)
Similarity:424/824 - (51%) Gaps:162/824 - (19%)


- Green bases have known domain annotations that are detailed below.


Zfish   299 MTAQPQQYGTLG-----KHDTRAYESTH------SSFGS-RAYDIFER-------MVLSRP---D 341
            |.|:..::..:|     .|.......||      |.||| :.||.|..       :.:::|   .
  Fly     1 MEARSLKHSLIGLNMNSTHINMDLSLTHEPANMQSQFGSFQNYDQFSAAGYSSTPLYITKPTGVG 65

Zfish   342 SLTGLQTSYSQN--SQLGQDTRSPDCHVTPI-----------YEDRTFQNPLYQSPTHGSQS--- 390
            ::|.:....|||  .....|...||....|:           |||.:...  ....|.|..|   
  Fly    66 AITKVAPHCSQNKIETNSTDNSIPDIENHPLATTVRYVQAGQYEDTSEYG--VAGLTCGIDSEYT 128

Zfish   391 ---------AASRNNTGFGTLQRTT-----------------------SQCSTLR----YQRGLF 419
                     .:..|.||   :|.||                       |||.|.:    ::...|
  Fly   129 AEAVVPYCYTSDANYTG---IQNTTSSIKPFSGRPFNDNINGAEAVADSQCRTFKSSAEFKLPQF 190

Zfish   420 SMGSMAT------HSDTYRPGHYRQADSNYSRHSAALDNAVTRSPSIDSVHKDPREFAWRDPELP 478
            :|.|:.|      ..|.|..|.               :|.:..:            ..||||.|.
  Fly   191 AMSSINTVPQRLEEKDDYIEGS---------------ENDICST------------MRWRDPNLS 228

Zfish   479 EVIRMLQHHFPSVQANAAAYIQHLCYGDNRIKAEVCRLGGIRHLVDLLDHKTLEVQRNACGALRN 543
            |||..|.:...:::||||||:|||||.|:..|.....||||..||.||.:.:.|:.:||||||||
  Fly   229 EVISFLSNPSSAIKANAAAYLQHLCYMDDPNKQRTRSLGGIPPLVRLLSYDSPEIHKNACGALRN 293

Zfish   544 LVYGKATDDNKVCVRNSGGIPALVRLLRKTPDSEVRELVTGVLWNLSSCDSVKMTITRDALGPLT 608
            |.||:..|:||..::|:|||.|||.||.::.::||:|||||||||:|||:.:|.:|..:||..:.
  Fly   294 LSYGRQNDENKRGIKNAGGIAALVHLLCRSQETEVKELVTGVLWNMSSCEDLKRSIIDEALVAVV 358

Zfish   609 NTVIIPHSGWGAAPQREDQKLKLHSSLVLRNTTGCLRNLSSAGEEARRQMRCCEGLIDSLLYIIK 673
            .:||.|||||.|....|     ...|.|.||.:|.|||:|||||.||..:|.||.|::.|||:::
  Fly   359 CSVIKPHSGWDAVCCGE-----TCFSTVFRNASGVLRNVSSAGEHARGCLRNCEHLVECLLYVVR 418

Zfish   674 TCVNTSDYDSKIVENCVCTLRNLSYRL-ELEMPPSRLMGTQDLDTLLGPD----TSSKQADYSCW 733
            |.:..::..:|.||||||.|||||||. |::.|      ..|....:.|:    :|||..:..|:
  Fly   419 TSIEKNNIGNKTVENCVCILRNLSYRCQEVDDP------NYDKHPFITPERVIPSSSKGENLGCF 477

Zfish   734 GLRKKKKKRSWQDQ------QWDGVGPIPGFSGSPKGAEMLWHPSVVKPYLTLLAESSNPATLEG 792
            |..||||:.:..|.      ..|.......::...||.|.||.|.||:.||:||...|||.|||.
  Fly   478 GTNKKKKEANNSDALNEYNISADYSKSSVTYNKLNKGYEQLWQPEVVQYYLSLLQSCSNPETLEA 542

Zfish   793 AAGSLQNLSAGTWRFASYIRAAVRKEKGLPILVELLRMDNDRVVCSVATALRNMALDARNKELIG 857
            |||::|||||..|:.:..|||.||||||||||||||||:.|||||:|||||||:|:|.|||||||
  Fly   543 AAGAIQNLSACYWQPSIDIRATVRKEKGLPILVELLRMEVDRVVCAVATALRNLAIDQRNKELIG 607

Zfish   858 KYAMRDLVTRLP-GN--GPSLLSDETVAAVCCALHEVTSRNMENARALAQTGGIDKLVTISRGRG 919
            ||||||||.:|| ||  .....||:|:.||...::||..:|.|.:|:|..:||||:|:.|:: |.
  Fly   608 KYAMRDLVQKLPSGNVQHDQNTSDDTITAVLATINEVIKKNPEFSRSLLDSGGIDRLMNITK-RK 671

Zfish   920 ERYSMKVVKAAAQVLNTLWQYRDLRTFYKKDGWNQNHFIT----------------------PVS 962
            |:|:..|:|.|:|||.|:||:.:||..|||:||.:..|::                      |::
  Fly   672 EKYTSCVLKFASQVLYTMWQHNELRDVYKKNGWKEQDFVSKHFTAHNTPPSSPNNVNNTLNRPMA 736

Zfish   963 TLERDRYRSQPTLPTSNVQMSPVIQSGGSATSSPAMLG--IRGQ 1004
            :..|.||..:.....::...|....||...::..|||.  :|.|
  Fly   737 SQGRTRYEDRTIQRGTSTLYSANDSSGAVMSNESAMLSEMVRKQ 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pkp4XP_690071.3 DUF966 <105..>252 CDD:283735
ARM 469..591 CDD:237987 65/121 (54%)
armadillo repeat 477..502 CDD:293788 12/24 (50%)
HEAT_2 506..580 CDD:290374 36/73 (49%)
armadillo repeat 510..546 CDD:293788 19/35 (54%)
armadillo repeat 554..589 CDD:293788 20/34 (59%)
armadillo repeat 595..647 CDD:293788 20/51 (39%)
ARM 636..>699 CDD:237987 34/62 (55%)
armadillo repeat 765..802 CDD:293788 22/36 (61%)
ARM 766..893 CDD:237987 84/129 (65%)
armadillo repeat 812..846 CDD:293788 29/33 (88%)
armadillo repeat 853..893 CDD:293788 24/42 (57%)
armadillo repeat 899..934 CDD:293788 15/34 (44%)
p120ctnNP_001036444.1 ARM 227..341 CDD:237987 61/113 (54%)
armadillo repeat 227..252 CDD:293788 12/24 (50%)
armadillo repeat 260..296 CDD:293788 19/35 (54%)
armadillo repeat 304..339 CDD:293788 20/34 (59%)
ARM 307..442 CDD:237987 69/139 (50%)
armadillo repeat 347..392 CDD:293788 19/49 (39%)
armadillo repeat 515..556 CDD:293788 24/40 (60%)
ARM 516..643 CDD:237987 82/126 (65%)
armadillo repeat 562..596 CDD:293788 29/33 (88%)
armadillo repeat 601..641 CDD:293788 24/39 (62%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 123 1.000 Domainoid score I5526
eggNOG 1 0.900 - - E1_KOG1048
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 430 1.000 Inparanoid score I1698
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D125744at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm24726
orthoMCL 1 0.900 - - OOG6_104813
Panther 1 1.100 - - O PTHR10372
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 1 1.000 - - X765
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.900

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