DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kcng4a and Shawl

DIOPT Version :9

Sequence 1:NP_001103499.1 Gene:kcng4a / 561003 ZFINID:ZDB-GENE-050419-11 Length:538 Species:Danio rerio
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:627 Identity:159/627 - (25%)
Similarity:231/627 - (36%) Gaps:207/627 - (33%)


- Green bases have known domain annotations that are detailed below.


Zfish    62 LINVGGNRYTFPWSTLEQFPLTRLGRLKPCSSPEEIARVCDDYDEARHEFFFDRSPNAFRVILNF 126
            ::||.|.||....:||::.|.|||.||     .|.:|    :||...:|:||||.|..|..|||:
  Fly     8 ILNVSGIRYETYKATLKKIPATRLSRL-----TEALA----NYDPVLNEYFFDRHPGVFTQILNY 63

Zfish   127 LAAGKLRLLREMCALSLHEELNYWGVEMTYMERCC------KRKMYTRL---------------E 170
            ...|||....::|.....|||.:||::...:|.||      .|.....|               |
  Fly    64 YRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTEE 128

Zfish   171 EVAELERREEERRQRNLQLRPPIVETRYRKFMNQLRDMVENPQSGVPGKVFACFSVLMVAITVIS 235
            ::|.|...||......|..        :::...::..|.:.|.|....|:.|..||..:.::|||
  Fly   129 QIARLFGFEEALSNGELNC--------WQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVIS 185

Zfish   236 LCISTMPDLR------------------------------------------------------- 245
            .|:.|.|..|                                                       
  Fly   186 FCLKTHPGFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNY 250

Zfish   246 -----------------------------------------EEENRG-----------VCSQKCQ 258
                                                     ||:..|           ...|..:
  Fly   251 TSYSSGNFTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHE 315

Zfish   259 HMFIIETVCVAWFSLEFLLRFVQARSKLQFLRGPLNIIDAMAILPYYVSLVVDEKPNDENERPSG 323
            ..|.:|.||..||.:|.::|.:.:.:..||::.|:||||..|.|.:|         .|..:|...
  Fly   316 AFFYVELVCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFY---------TDVMQRMGE 371

Zfish   324 GKGYLDKLGLVLRILRALRILYVMRLARHSLGLQTLGLTVRRSTREFGLLLLFLCVAVTLFSPLV 388
            ..|.|:...:|       ||:.:.:|.|||.||:.|..|.:.|.:|..||:.||.:.:..|:.|.
  Fly   372 YTGLLEAFSIV-------RIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLA 429

Zfish   389 HLAESELTGVQD-----FSSIPASYWWAIISMTTVGYGDMVPRSIPGQVVALSSILSGILIMAFP 448
            :.||.    :||     |.|||...||||::||||||||:.|::.||..|.....|:|:|.:|.|
  Fly   430 YYAEK----LQDNPDNQFKSIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALP 490

Zfish   449 ATSIFHMFSRSYQE--------------LKQEHDRLFKEECAAAAAATTGLEEEQDGGWVAFPP- 498
            ...|...||..|..              |..|..|..:|..|.....|..:::.        || 
  Fly   491 VPVIVSNFSMFYSHTQARSKLPKKRRRVLPVEQPRRKREPTAPHRGRTNAIKQT--------PPT 547

Zfish   499 -PRLVLTPDTETAGSCEDLSL--LGNGGETSGNNKHPLPAGA 537
             |.||       ||....:..  .|.||...|::    .|||
  Fly   548 GPGLV-------AGGVVPVGAGGPGLGGHAVGHS----AAGA 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kcng4aNP_001103499.1 BTB 63..169 CDD:197585 40/111 (36%)
BTB_2 63..160 CDD:280393 37/96 (39%)
Ion_trans 261..464 CDD:278921 74/221 (33%)
Ion_trans_2 376..458 CDD:285168 35/86 (41%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 38/99 (38%)
BTB_2 7..97 CDD:280393 37/97 (38%)
Ion_trans 307..506 CDD:278921 75/218 (34%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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