DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kcnv1 and Shawl

DIOPT Version :9

Sequence 1:XP_688404.1 Gene:kcnv1 / 559915 ZFINID:ZDB-GENE-100922-109 Length:485 Species:Danio rerio
Sequence 2:NP_001097131.2 Gene:Shawl / 5740840 FlyBaseID:FBgn0085395 Length:937 Species:Drosophila melanogaster


Alignment Length:513 Identity:143/513 - (27%)
Similarity:217/513 - (42%) Gaps:152/513 - (29%)


- Green bases have known domain annotations that are detailed below.


Zfish    42 IINVGGSRYILSQELLASHPETRLGKL--ALSSRDSALDLCDDADFLENEYFFDRNSQTFQYIMN 104
            |:||.|.||...:..|...|.|||.:|  ||::.|..|          |||||||:...|..|:|
  Fly     8 ILNVSGIRYETYKATLKKIPATRLSRLTEALANYDPVL----------NEYFFDRHPGVFTQILN 62

Zfish   105 FYKTGHLHVREELCVISFLQEIEYWGIDELRIDSCCRDKYYRRKEMKESLDIRKDADVMDK---- 165
            :|:||.||...::|...|.:|:|:||:|..:::.||...|...::.:.:|.|....|:.::    
  Fly    63 YYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWSTYSIHRDTQNTLAILDKLDIENEKPTE 127

Zfish   166 ---------EEEDFTGVL-C-QDLRQRLWDIMENPDSSKAAKTFGTLSMFFVVVSIVNMAL---- 215
                     ||....|.| | |.::.::|.:.:.|.||..||....:|:||:.||:::..|    
  Fly   128 EQIARLFGFEEALSNGELNCWQRIKPKIWAMFDEPSSSTGAKIVAGMSVFFIFVSVISFCLKTHP 192

Zfish   216 -------------------------------------------------------------ISLD 219
                                                                         .|.:
  Fly   193 GFRVDLPSGAHDAHGPGAGGPPHGHDPMGEPPQTHQYHQHSITPPSGSIGPTFRVTNYTSYSSGN 257

Zfish   220 FSVIG--API------------------ILD------------------------------ILEY 234
            |:..|  .||                  ||:                              .:|.
  Fly   258 FTASGQATPIATIKGGQRQRLKRNINGSILNEFIEEKILGHNGRRKHGWIETYGQPHEAFFYVEL 322

Zfish   235 ICIIWFTGELVLRFLCVRDKCKFSRSVVNIIDLLAILPFYVTLAVESLHGESTELENVGRVVQVL 299
            :|.:||..|:::|.:...:..:|.:|.|||||..|.|.||..  |....||.|.|      ::..
  Fly   323 VCNVWFFIEVIIRLIVSPNLWQFIKSPVNIIDFTATLSFYTD--VMQRMGEYTGL------LEAF 379

Zfish   300 RLMRSLRMLKLGRHSTGLKSLGLTIAQCYEEVGLLMLFLSVGISIFATLEYAIE--HDTPETTFT 362
            .::|.:|:.||.|||.||:.|..|.....:|:.||:.||.:||..||:|.|..|  .|.|:..|.
  Fly   380 SIVRIMRLFKLTRHSPGLRILIHTFKASAKELTLLVFFLVLGIVFFASLAYYAEKLQDNPDNQFK 444

Zfish   363 NVPSAWWWATTSMTTVGYGDIRPDTAVGKVMAFICILSGILILALPIAIINDRFSACY 420
            ::|...|||..:||||||||:.|.|..|..:..:|.|:|:|.:|||:.:|...||..|
  Fly   445 SIPLGLWWAIVTMTTVGYGDVAPKTYPGMFVGALCALAGVLTIALPVPVIVSNFSMFY 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kcnv1XP_688404.1 BTB 42..141 CDD:197585 39/100 (39%)
BTB_2 42..139 CDD:280393 38/98 (39%)
Ion_trans 226..420 CDD:278921 77/243 (32%)
Ion_trans_2 337..417 CDD:285168 35/81 (43%)
ShawlNP_001097131.2 BTB 7..99 CDD:197585 39/100 (39%)
BTB_2 7..97 CDD:280393 38/98 (39%)
Ion_trans 307..506 CDD:278921 74/204 (36%)
Ion_trans_2 <449..499 CDD:285168 22/49 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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