DRSC/TRiP Functional Genomics Resources

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Protein Alignment rnf150a and Rnf150

DIOPT Version :9

Sequence 1:NP_001139044.1 Gene:rnf150a / 559804 ZFINID:ZDB-GENE-060213-1 Length:418 Species:Danio rerio
Sequence 2:XP_017168354.1 Gene:Rnf150 / 330812 MGIID:2443860 Length:450 Species:Mus musculus


Alignment Length:452 Identity:306/452 - (67%)
Similarity:352/452 - (77%) Gaps:36/452 - (7%)


- Green bases have known domain annotations that are detailed below.


Zfish     1 MVVSLTQACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYLDPVT----------SE 55
            |.:||.|||||||||||||||||||||||||||||||||||||||||||:|..          :|
Mouse     1 MTMSLIQACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYLEPEPGAAVAGSGGGAE 65

Zfish    56 IKTDRSECGRYGEHSPKRDARGFVFM---PQDRQACDGNTRFPLPHPSIPWIALIAKGNCTFREK 117
            :.|::||||||||||||:||||.|.|   .|||.|||.||:|..|.....|||||.|||||:|:|
Mouse    66 LHTEKSECGRYGEHSPKQDARGEVVMASSAQDRLACDPNTKFAAPAHGKHWIALIPKGNCTYRDK 130

Zfish   118 IRHAAALNASAVVIFNVGSSNSNDTITMPHHGTGDVVAIMIPEPKGREIMALLEKNITVAMHISI 182
            ||:|...||||||||||| ||:|:||||||.|..|:||||||||||:||::|||:||||.|:|:|
Mouse   131 IRNAFLQNASAVVIFNVG-SNTNETITMPHAGVEDIVAIMIPEPKGKEIVSLLERNITVTMYITI 194

Zfish   183 GTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRSQ-------------RR 234
            ||||||||||||||||||||||||||||||||||||||||||||||||:|             ||
Mouse   195 GTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQYTIATGQDWQLYRRR 259

Zfish   235 LGDAAKKAISKLQVRTIRKGDKETDSDFDNCAVCIEDYKPNDVVRILPCRHVFHRNCVDPWLQDH 299
            ||||||||||||||||||||||||:|||||||||||.||||||||||||||:||::||||||.||
Mouse   260 LGDAAKKAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDH 324

Zfish   300 RTCPMCKMNILKALGIPPNTDCSDDAPPDYETS-SGQPSIAVTGASEVSVGESSLVLDQPLRITG 363
            |||||||||||||||||||.||.||.|.|:|.| .|.|:..:||||:.:|.|||:.||..:|..|
Mouse   325 RTCPMCKMNILKALGIPPNADCMDDLPIDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVG 389

Zfish   364 LSHDYQEMNSVPADAESPHIASSEQHQPSMSNDPD---IMPMEI----AELQSDLEQEDVKS 418
            .....|:.:..|.:.|:....:|.| :|::|:|.|   ||.:|:    .||.:|.:.|:|||
Mouse   390 ALQVVQDPDPAPQEGEAIFTTNSGQ-EPALSSDSDISLIMALEVGLSDVELSTDQDCEEVKS 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rnf150aNP_001139044.1 PA_GRAIL_like 45..180 CDD:239037 93/147 (63%)
UPF0233 <194..>219 CDD:299753 24/24 (100%)
zf-RING_2 263..306 CDD:290367 37/42 (88%)
Rnf150XP_017168354.1 PA_GRAIL_like 45..192 CDD:239037 93/147 (63%)
RING-H2_GRAIL 289..336 CDD:319582 41/46 (89%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C193129814
Domainoid 1 1.000 89 1.000 Domainoid score I27927
eggNOG 1 0.900 - - E33208_3BHU7
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H33783
Inparanoid 1 1.050 592 1.000 Inparanoid score I5332
OMA 1 1.010 - - QHG50669
OrthoDB 1 1.010 - - D1487241at2759
OrthoFinder 1 1.000 - - FOG0000832
OrthoInspector 1 1.000 - - oto52489
orthoMCL 1 0.900 - - OOG6_107948
Panther 1 1.100 - - O PTHR22765
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3602
SonicParanoid 1 1.000 - - X295
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 1 1.500 - -
1818.300

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