DRSC/TRiP Functional Genomics Resources

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Protein Alignment myo1d and Mhc

DIOPT Version :9

Sequence 1:XP_688008.5 Gene:myo1d / 559562 ZFINID:ZDB-GENE-130531-15 Length:1004 Species:Danio rerio
Sequence 2:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster


Alignment Length:1034 Identity:326/1034 - (31%)
Similarity:509/1034 - (49%) Gaps:155/1034 - (14%)


- Green bases have known domain annotations that are detailed below.


Zfish    12 ADFVLLDNVSLEEFMANLKLRFEKGRIYSYIGEVVVSVNPYRAMNIYGRDVIEQYKGRELYERPP 76
            ||..:|:...:   :.||:.|:....||:|.|...|::|||:...:|.....:.|:|:...|.||
  Fly    92 ADMTVLNTPCV---LHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPP 153

Zfish    77 HLFAIADAAYKAMKRRNKDTCIVISGESGAGKTEASKYIMQYIAAITNPSQRAEVERVKNML--- 138
            |:|||:|.||..|...:.:..::|:|||||||||.:|.::.|.|.:....:..|..:.|..|   
  Fly   154 HIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQ 218

Zfish   139 -LKSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPIGGHINNYLLEKSRVIFQQEGERSFH 202
             :::|.||||||||||.||||||||||::.|:|...|...|..|..|||||:|||.||..|||:|
  Fly   219 VVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYH 283

Zfish   203 SFYQLVKGAPDAQLRSLHIQRDPTAYNY--IKVGGQLKSSINDSAEFKAVADAMKVIGFTTEEIQ 265
            .|||::.|:... ::.:.:..| ..|:|  :..|....:||:|:.||.....|..::|||.:|.:
  Fly   284 IFYQIMSGSVPG-VKDICLLTD-NIYDYHIVSQGKVTVASIDDAEEFSLTDQAFDILGFTKQEKE 346

Zfish   266 TVYKILATILHLGNLKF---------GTDGDVTLIENSKLVSVLGDLLSTKEENVEKAMLYRTVA 321
            .||:|.|.::|:|.:||         ..||:.   |..::..:.|  ..|.|  :.|.:|...:.
  Fly   347 DVYRITAAVMHMGGMKFKQRGREEQAEQDGEE---EGGRVSKLFG--CDTAE--LYKNLLKPRIK 404

Zfish   322 TGRDVIDKQHTHQEASYGRDALAKAIYERLFCWIVGRINDIIEVKNYDARVHGKNTVIGVLDIYG 386
            .|.:.:.:....|:.:....||.|.:::|||.|:|.:.|:.::.:  ..|.|    .||||||.|
  Fly   405 VGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLDTQ--QKRQH----FIGVLDIAG 463

Zfish   387 FEIFQNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQI-IVDLVEQQHK 450
            ||||:.|.|||.|||:.||||||.|...:...|||||:||||.|..||:..:.: .:||:|:. .
  Fly   464 FEIFEYNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKP-M 527

Zfish   451 GIFAVLDEACMNVGKVTDEMFLQAL-NGKLAKHAHYTSRKLSPTDKNLEFERDFRIRHYAGDVTY 514
            ||.::|:|..| ..|.||:.|.:.| |..|.|.|.:...|   ..|..:....|.|.||||.|:|
  Fly   528 GILSILEEESM-FPKATDQTFSEKLTNTHLGKSAPFQKPK---PPKPGQQAAHFAIAHYAGCVSY 588

Zfish   515 SVVGFIDKNK----DTLFQDFKRLLYNSSNPVLKAMWPE--GKLSITEVTKRP--------LTAA 565
            ::.|:::|||    ||:...||:    |.|.:|..::.:  |:....|..|..        .|.:
  Fly   589 NITGWLEKNKDPLNDTVVDQFKK----SQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVS 649

Zfish   566 TLFKNSMISLVEKLASKEPYYVRCIKPNDVKSPLLFEHERCKHQVEYLGLLENVRVRRAGFANRQ 630
            :.:|..:.||:..|.|.:|::||||.||::|.|.:.:.....||:...|:||.:|:.|.||.||.
  Fly   650 SAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRM 714

Zfish   631 TYPRFLQRYKMISEFTWPN--HDLSSDKEAVKRLLQGCGFEHD-VAYGKTKVFIRTPRTIFSLEE 692
            .||.|..|||::.    |.  ..:..||:|.:.:::......| ...|.||||.|. ..:..:||
  Fly   715 MYPDFKMRYKIMC----PKLLQGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRA-GVLGQMEE 774

Zfish   693 QRAEMVKRIVLFLQKVWRGTLARMRYRRM---RAAL-IIIRAYRRY-------------KVK--- 737
            .|.|.:.:|:.::|...||.|:|..::::   |.|| ::.|..|:|             |||   
  Fly   775 FRDERLGKIMSWMQAWARGYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLL 839

Zfish   738 --SYIREVIRRF----KNVRDMKDHGKHVKWPTPPKVLRKFEEALRSIYNRWWAWTLIKPLSPEK 796
              |.|.:.|.|.    |...::  |...||       :||..|||.:            .|..||
  Fly   840 NVSRIEDEIARLEEKAKKAEEL--HAAEVK-------VRKELEALNA------------KLLAEK 883

Zfish   797 TVQIRAKVATLECLKGQRADLGLQRAWEGNYLKKDSPGTASSFTLVSSDL--QRKDKFMRVLFSS 859
            |       |.|:.|.|::.  .||...|.|          :..|...:||  |.:|...|:....
  Fly   884 T-------ALLDSLSGEKG--ALQDYQERN----------AKLTAQKNDLENQLRDIQERLTQEE 929

Zfish   860 NVR-KINRFNKAEDRALL-----ITDRHLYKMDPLKQYKPMKSIPLYNVTGVSISPGKDQLVVFH 918
            :.| ::.:..|..|:.:.     |.|..| .:...:|.|..|...:.|:......  :|:|:...
  Fly   930 DARNQLFQQKKKADQEISGLKKDIEDLEL-NVQKAEQDKATKDHQIRNLNDEIAH--QDELINKL 991

Zfish   919 TKDNRDLIVCLQGMVPAGDSRIGELVGTL---LSHFKSEKRKLQVNTVSPIHCSMNGRK 974
            .|:.:     :||..   :.:.||.:...   ::|....|.||: .|:..:..|:...|
  Fly   992 NKEKK-----MQGET---NQKTGEELQAAEDKINHLNKVKAKLE-QTLDELEDSLEREK 1041

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
myo1dXP_688008.5 MYSc_Myo1 23..682 CDD:276829 248/692 (36%)
Myosin_TH1 803..994 CDD:336273 38/183 (21%)
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832
MYSc 81..777 CDD:214580 254/716 (35%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 248/695 (36%)
Myosin_tail_1 842..1897 CDD:279860 55/252 (22%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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