DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ddr2b and smal

DIOPT Version :9

Sequence 1:XP_017206819.2 Gene:ddr2b / 559428 ZFINID:ZDB-GENE-060503-361 Length:838 Species:Danio rerio
Sequence 2:NP_723165.2 Gene:smal / 5740323 FlyBaseID:FBgn0085409 Length:939 Species:Drosophila melanogaster


Alignment Length:595 Identity:179/595 - (30%)
Similarity:271/595 - (45%) Gaps:111/595 - (18%)


- Green bases have known domain annotations that are detailed below.


Zfish    24 AVCRYPLGMNGGQIQDEDISASSQWSES-TAARYGRLDFDDGDGAWCPDVMAEAHSLKEFLQIDL 87
            |.|..||||....|.|..|:|||....: ...::.||..|:..|||||..|. :::|||:||:||
  Fly    76 ATCNVPLGMESLLITDAQITASSAHDMAFVGPQHARLKTDNDGGAWCPKHMV-SNALKEYLQVDL 139

Zfish    88 RTLHFVTLVGTQGRHADGVGNEFAQRYRIKYSRDG-TRWVSWRDRQGRQIIEGNSNAYDIVLKDL 151
            ...|.:|.:.||||:..|.|.|:.:.|.::|.|.| .:|..|::.||::|:.||.|.|..|...|
  Fly   140 LQTHVITAIRTQGRYGKGQGQEYTEAYVLEYWRPGFDKWQRWKNIQGKEILPGNINTYSEVENAL 204

Zfish   152 EPPIIARFVRFMPVTDPSMIVCMRVELYGCEWLDGLVSYSAPAGQQMTFRGQQIYLNDTVYDG-A 215
            :|.|.|..:|..|.......||:|.|:.||.|.:|:||||.|.|.|   ||.::.|:|..||| .
  Fly   205 QPIIFASKIRIYPYGQYDRTVCLRAEIVGCPWEEGIVSYSIPKGVQ---RGMEVDLSDKTYDGNE 266

Zfish   216 VSSSMAEGLGQLTDGSWGLDDFTKSQVYGVWPGYDYVGWTN--ASLPGGSVEMTFEFDRVRNFTS 278
            ......:|||||.||..|.|:| ::.::|...||:::||.|  ..|.|..||:.||||.||||::
  Fly   267 QGDRYVDGLGQLVDGQKGKDNF-RTDIHGFGKGYEWIGWRNDTPGLLGKPVEIVFEFDTVRNFSA 330

Zfish   279 MKVHCNNMYAWGVKMFRQAVCSFRSDADW-EPNPVFFKPKADSISPSARFITVALGNRMASAIRC 342
            :.:|.|||:...|::|..|...|.....: ...||.|....|:|...||.:|:.|.:|:...::.
  Fly   331 IVLHTNNMFTKDVQVFVHAKVFFSIGGRYFSGEPVQFSYMPDTIMDHARDVTIKLHHRVGKYLKI 395

Zfish   343 RFAFSDIWMMFSEIAFQSDTAVYNTSLVPRKRNQAP-----VDDPTHKIDDSSTR---------- 392
            ...|:..|:|.|||:|.|..|:.|.:....:|:.:|     |.|.|:..:..:.|          
  Fly   396 NLYFAVKWIMLSEISFISVPAMGNFTDEQEQRSNSPSQAQDVHDETNGSEYQANRNKPNGVGGSA 460

Zfish   393 -------------------------------------------ILIGCLVAIIAILLAIIIIILW 414
                                                       ::|..|..||.:|:|||:.|:.
  Fly   461 GGLGEGVAAAGGDIVGNNKYNNGPQLIAPRPIDQEPNDANFIGVVIVVLTTIIILLVAIILFIVS 525

Zfish   415 RQVWQKMIEKASR--RMLDDELAVRLSVQREAF-----VHR--SSSLSSDVESTSTYERIFPLGS 470
            |       .|.:|  .:||   |.:.|......     .||  .:|:.::|:...:..:    .|
  Fly   526 R-------TKRARGSNVLD---AFQYSFNPNTLGGNVDKHRPNGNSIKANVDDNDSIGK----NS 576

Zfish   471 DYQEPSQLLRKLPEFQAMENLAMIDGASEPSPAQGTDEAPHYAEADIP-GAHSYRVTVVNMPLS- 533
            .|.||         |........::|.:..:..| .:..|.|  .|:| |.::.......||.| 
  Fly   577 LYHEP---------FNVNMYTCGVNGYAAVNDLQ-CNMTPDY--TDVPEGGYAVPHMQDYMPSSK 629

Zfish   534 -----PGRDG 538
                 ||..|
  Fly   630 MGGGAPGGGG 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ddr2bXP_017206819.2 FA58C 28..180 CDD:238014 59/153 (39%)
PTKc_DDR 542..835 CDD:270644
smalNP_723165.2 FA58C 78..234 CDD:214572 60/156 (38%)
FA58C 81..233 CDD:238014 59/152 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 168 1.000 Domainoid score I3782
eggNOG 1 0.900 - - E1_KOG1094
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 524 1.000 Inparanoid score I1210
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D122892at33208
OrthoFinder 1 1.000 - - FOG0001292
OrthoInspector 1 1.000 - - mtm6449
orthoMCL 1 0.900 - - OOG6_103661
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X998
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.830

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