DRSC/TRiP Functional Genomics Resources

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Protein Alignment lgr4 and Lgr4

DIOPT Version :9

Sequence 1:NP_001340791.1 Gene:lgr4 / 558825 ZFINID:ZDB-GENE-111013-1 Length:971 Species:Danio rerio
Sequence 2:NP_001285192.1 Gene:Lgr4 / 5740505 FlyBaseID:FBgn0085440 Length:809 Species:Drosophila melanogaster


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lgr4NP_001340791.1 LRR 1 58..82
leucine-rich repeat 64..85 CDD:275380
LRR_8 84..144 CDD:316378
LRR 2 84..106
leucine-rich repeat 86..109 CDD:275380
LRR 3 107..130
leucine-rich repeat 110..133 CDD:275380
LRR 4 131..154
leucine-rich repeat 134..157 CDD:275380
LRR 137..>452 CDD:227223
LRR 5 156..178
leucine-rich repeat 158..181 CDD:275380
LRR 6 179..202
leucine-rich repeat 182..205 CDD:275380
LRR 7 204..226
leucine-rich repeat 206..229 CDD:275380
LRR 8 227..250
leucine-rich repeat 230..252 CDD:275380
LRR_8 251..308 CDD:316378
LRR 9 251..273
leucine-rich repeat 253..276 CDD:275380
LRR 10 275..297
leucine-rich repeat 277..298 CDD:275380
LRR 11 299..321
LRR 12 322..344
LRR 13 345..366
leucine-rich repeat 348..369 CDD:275380
LRR 14 367..390
leucine-rich repeat 370..393 CDD:275380
LRR 15 391..414
leucine-rich repeat 394..415 CDD:275380
LRR 16 416..438
leucine-rich repeat 418..438 CDD:275380
7tmA_LGR4 527..811 CDD:320483
TM helix 1 528..554 CDD:320483
TM helix 2 562..587 CDD:320483
TM helix 3 607..637 CDD:320483
TM helix 4 649..679 CDD:320483
TM helix 5 698..727 CDD:320483
TM helix 6 736..766 CDD:320483
TM helix 7 779..804 CDD:320483
Lgr4NP_001285192.1 Ldl_recept_a 87..124 CDD:278486
LRR_RI <184..397 CDD:238064
LRR_8 188..248 CDD:290566
leucine-rich repeat 188..211 CDD:275380
leucine-rich repeat 212..235 CDD:275380
leucine-rich repeat 238..261 CDD:275380
LRR_8 261..320 CDD:290566
leucine-rich repeat 262..285 CDD:275380
LRR_4 284..325 CDD:289563
leucine-rich repeat 286..309 CDD:275380
LRR_4 308..348 CDD:289563
leucine-rich repeat 310..334 CDD:275380
leucine-rich repeat 335..357 CDD:275380
LRR_8 356..416 CDD:290566
leucine-rich repeat 358..381 CDD:275380
LRR_4 381..421 CDD:289563
leucine-rich repeat 382..405 CDD:275380
leucine-rich repeat 406..427 CDD:275380
7tm_1 483..741 CDD:278431
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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