DRSC/TRiP Functional Genomics Resources

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Protein Alignment taf15 and caz

DIOPT Version :9

Sequence 1:NP_001073442.1 Gene:taf15 / 558760 ZFINID:ZDB-GENE-061215-102 Length:434 Species:Danio rerio
Sequence 2:NP_523365.2 Gene:caz / 32587 FlyBaseID:FBgn0285954 Length:399 Species:Drosophila melanogaster


Alignment Length:486 Identity:190/486 - (39%)
Similarity:223/486 - (45%) Gaps:158/486 - (32%)


- Green bases have known domain annotations that are detailed below.


Zfish    17 GGYGGSQGYQGGQQGYG-----------QGNGSGSYSEQSYGGYGQSGGDSYGQSSQGYSSGGYG 70
            |||||..|     |||.           ..|.:|:|:|.. ..||:.||        ||.||.  
  Fly     4 GGYGGGSG-----QGYNNFAVPPPNYQQMPNKTGNYNEPP-PNYGKQGG--------GYDSGS-- 52

Zfish    71 QQQQGSDSYGQQGSESSSGYGDKSYGQQRSYGQQSSGGGGGGGYGQSSG-SYGGSQGGYGRRNDG 134
                     |.:||                 |...:||||||.:....| |||         |.|
  Fly    53 ---------GHRGS-----------------GGSGNGGGGGGSWNDRGGNSYG---------NGG 82

Zfish   135 DSRRFGDDEGSDRSEGYRGRGRGGYDRGGYDRGGRGGPPSGMGGGDRGGYKNYGGPKDYGQKDDD 199
            .|:           :.| .:|.|||..||   ||.||   |.|||.       ||.....|:|  
  Fly    83 ASK-----------DSY-NKGHGGYSGGG---GGGGG---GGGGGS-------GGNDMITQED-- 120

Zfish   200 GDQDNSDNNTIFVQGLGEDVNAQEVGDYFKQIGIIKVNKKTGKPMINLYSDKATGRLKGEATVSF 264
                     ||||.|:......|::..:|..|||||.:|:|.||.|.||.:|.||..||||||::
  Fly   121 ---------TIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTY 176

Zfish   265 DDPPSAKAAIDWFDGKEFNGRPIKVSFATRRAEFTQRGGGSGGRGGRGGFRGRGGGGGGGGGGGF 329
            ||..:|::||:||||::|||..||||.|.|:..:.:.|||.||.||||||.||.|||||||||| 
  Fly   177 DDTNAAQSAIEWFDGRDFNGNAIKVSLAQRQNNWNKGGGGGGGGGGRGGFGGRRGGGGGGGGGG- 240

Zfish   330 GGGPSFD--------------------------VRGGDWPCPNSSCGNMNFARRYECNRCGTPK- 367
            |||..||                          .|.|||.|  :||.|.|||.|.|||||.||| 
  Fly   241 GGGGRFDRGGGGGGGRYDRGGGGGGGGGGGNVQPRDGDWKC--NSCNNTNFAWRNECNRCKTPKG 303

Zfish   368 -PEGDSFGGGGGG-SDRGSRGGY--GGDHGDRGGGF----RGGRGGGFRGGDRGGGGY------- 417
             .||.|.|||||| ...|..|||  |.|.|..|||:    |||...|..||..|||||       
  Fly   304 DDEGSSGGGGGGGYGGGGGGGGYDRGNDRGSGGGGYHNRDRGGNSQGGGGGGGGGGGYSRFNDNN 368

Zfish   418 ------KMGGRGDHRD--------DRRGRPY 434
                  :.||.|:.||        ..|.|||
  Fly   369 GGGRGGRGGGGGNRRDGGPMRNDGGMRSRPY 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
taf15NP_001073442.1 RRM <209..>297 CDD:223796 46/87 (53%)
RRM_FUS_TAF15 209..291 CDD:240979 43/81 (53%)
zf-RanBP 338..368 CDD:279035 20/31 (65%)
RanBP2-type Zn finger 342..363 CDD:275376 12/20 (60%)
cazNP_523365.2 RRM <118..>205 CDD:223796 46/97 (47%)
RRM_SARFH 122..204 CDD:240978 43/81 (53%)
zf-RanBP 275..304 CDD:279035 20/30 (67%)
RanBP2-type Zn finger 279..298 CDD:275375 12/20 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170588238
Domainoid 1 1.000 88 1.000 Domainoid score I7897
eggNOG 1 0.900 - - E1_KOG1995
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 292 1.000 Inparanoid score I2767
OMA 1 1.010 - - QHG49372
OrthoDB 1 1.010 - - D1539664at2759
OrthoFinder 1 1.000 - - FOG0002238
OrthoInspector 1 1.000 - - otm24413
orthoMCL 1 0.900 - - OOG6_109470
Panther 1 1.100 - - LDO PTHR23238
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X712
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.810

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