DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PRKD1 and prkd1

DIOPT Version :9

Sequence 1:NP_001316998.1 Gene:PRKD1 / 5587 HGNCID:9407 Length:920 Species:Homo sapiens
Sequence 2:XP_005158873.1 Gene:prkd1 / 557123 ZFINID:ZDB-GENE-080131-1 Length:886 Species:Danio rerio


Alignment Length:922 Identity:735/922 - (79%)
Similarity:797/922 - (86%) Gaps:38/922 - (4%)


- Green bases have known domain annotations that are detailed below.


Human     1 MSAPPVLRPPSPLLPVAAAAAAAAAALVPGSGPGPAPFLAPVAAPVGGISFHLQIGLSREPVLLL 65
            ||.|||:||||||               |||               .||||.:||||||||||| 
Zfish     1 MSVPPVIRPPSPL---------------PGS---------------QGISFQIQIGLSREPVLL- 34

Human    66 QDSSGDYSLAHVREMACSIVDQKFPECGFYGMYDKILLFRHDPTSENILQLVKAASDIQEGDLIE 130
              .||::|||.||||||||||||||||||||||||||||||||.||||||||::|::|.||||:|
Zfish    35 --DSGEFSLAQVREMACSIVDQKFPECGFYGMYDKILLFRHDPNSENILQLVRSAAEIMEGDLVE 97

Human   131 VVLSASATFEDFQIRPHALFVHSYRAPAFCDHCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNN 195
            ||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish    98 VVLSASATVEDFQIRPHALFVHSYRAPAFCDHCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNN 162

Human   196 CSGVRRRRLSNVSLTGVSTIRTSSAELSTSAPDEPLLSPVSPGFEQKSPSESFIGREKRSNSQSY 260
            |||:|:||||||||||::..|:.|||.|.|..||.|||||||..|||:||:.|.|| .|||||||
Zfish   163 CSGIRKRRLSNVSLTGLTNTRSISAEPSPSTSDEALLSPVSPSMEQKTPSDIFPGR-GRSNSQSY 226

Human   261 IGRPIHLDKILMSKVKVPHTFVIHSYTRPTVCQYCKKLLKGLFRQGLQCKDCRFNCHKRCAPKVP 325
            |||||.|||||:|||||||||||||||||||||:||||||||||||||||||:||||||||||||
Zfish   227 IGRPIELDKILLSKVKVPHTFVIHSYTRPTVCQHCKKLLKGLFRQGLQCKDCKFNCHKRCAPKVP 291

Human   326 NNCLGEVTINGDLLSPGAESDVVMEEGSDDNDSERNSGLMDDMEEAMVQDAEMAMAECQNDSGEM 390
            |||||||:.||||||||||||||||||.||:|.:|:|.|:|||||::|.|:...:.....:.|:.
Zfish   292 NNCLGEVSRNGDLLSPGAESDVVMEEGCDDHDGDRHSPLIDDMEESLVGDSAAYLEAGHGELGDF 356

Human   391 QDPDPDHEDANRTISPSTSNNIPLMRVVQSVKHTKRKSSTVMKEGWMVHYTSKDTLRKRHYWRLD 455
            ||.|||  ::||.||||||||||||||||||||||||||.||||||:||:|||||||||||||||
Zfish   357 QDLDPD--ESNRIISPSTSNNIPLMRVVQSVKHTKRKSSNVMKEGWLVHFTSKDTLRKRHYWRLD 419

Human   456 SKCITLFQNDTGSRYYKEIPLSEILSLEPVKTSALIPNGANPHCFEITTANVVYYVGENV--VNP 518
            |||||||||||||:|||||||||:|||||.||..|:|.|||||||||.|.::|||||||:  .:.
Zfish   420 SKCITLFQNDTGSKYYKEIPLSEVLSLEPAKTFNLLPEGANPHCFEIATTSLVYYVGENLSRADG 484

Human   519 SSPSPNNSVLTSGVGADVARMWEIAIQHALMPVIPKGSSVGTGTNLHRDISVSISVSNCQIQENV 583
            .|....:|:|.||||.|||.|||:.|||||||||.||.|.|...|.|:::|:|||||||||||||
Zfish   485 GSSGYGSSMLVSGVGQDVAHMWEMVIQHALMPVIAKGISQGGHHNYHKEVSISISVSNCQIQENV 549

Human   584 DISTVYQIFPDEVLGSGQFGIVYGGKHRKTGRDVAIKIIDKLRFPTKQESQLRNEVAILQNLHHP 648
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish   550 DISTVYQIFPDEVLGSGQFGIVYGGKHRKTGRDVAIKIIDKLRFPTKQESQLRNEVAILQNLHHP 614

Human   649 GVVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPEHITKFLITQILVALRHLHFKNIVHC 713
            |:||||||||||||||||||||||||||||||||||||||.|||||::|||||||||||||||||
Zfish   615 GIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVSQILVALRHLHFKNIVHC 679

Human   714 DLKPENVLLASADPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVG 778
            |||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Zfish   680 DLKPENVLLASADSFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVG 744

Human   779 VIIYVSLSGTFPFNEDEDIHDQIQNAAFMYPPNPWKEISHEAIDLINNLLQVKMRKRYSVDKTLS 843
            ||||||||||||||||||||||||||||||||||||.::.||||||||||||||||||||||:||
Zfish   745 VIIYVSLSGTFPFNEDEDIHDQIQNAAFMYPPNPWKTVTPEAIDLINNLLQVKMRKRYSVDKSLS 809

Human   844 HPWLQDYQTWLDLRELECKIGERYITHESDDLRWEKYAGEQGLQYPTHLINPSASHSDTPETEET 908
            ||||||||.|||||.||||:.||||||||||||||.:|.:.|||||.||:||.|...:..|.:|.
Zfish   810 HPWLQDYQMWLDLRTLECKMLERYITHESDDLRWEHFAEQNGLQYPAHLMNPHADVRELEEPDEL 874

Human   909 EMKALGERVSIL 920
            .|..|.:|||:|
Zfish   875 VMGRLSDRVSVL 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRKD1NP_001316998.1 C1_1 147..196 CDD:278556 48/48 (100%)
C1 279..328 CDD:237996 46/48 (96%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 385..410 13/24 (54%)
PH_PKD 424..551 CDD:269945 96/128 (75%)
STKc_PKD 587..846 CDD:270984 248/258 (96%)
S_TKc 595..847 CDD:214567 241/251 (96%)
prkd1XP_005158873.1 C1_1 114..163 CDD:278556 48/48 (100%)
C1 245..294 CDD:237996 46/48 (96%)
PH_PKD 388..517 CDD:269945 96/128 (75%)
STKc_PKD 553..812 CDD:270984 248/258 (96%)
S_TKc 561..813 CDD:214567 241/251 (96%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C194343300
Domainoid 1 1.000 498 1.000 Domainoid score I2794
eggNOG 1 0.900 - - E1_KOG4236
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55680
Inparanoid 1 1.050 1459 1.000 Inparanoid score I1019
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG48438
OrthoDB 1 1.010 - - D182843at33208
OrthoFinder 1 1.000 - - FOG0002280
OrthoInspector 1 1.000 - - oto42577
orthoMCL 1 0.900 - - OOG6_103473
Panther 1 1.100 - - LDO PTHR22968
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1509
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 1 1.500 - -
1717.270

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