DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk1a and Dscam2

DIOPT Version :9

Sequence 1:XP_009297968.1 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2245 Species:Danio rerio
Sequence 2:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster


Alignment Length:2025 Identity:472/2025 - (23%)
Similarity:772/2025 - (38%) Gaps:435/2025 - (21%)


- Green bases have known domain annotations that are detailed below.


Zfish    22 PAGR---HNTALKEEEDS---------------VYSGGDRSRKDTAR--------SRSTALLTRV 60
            |.|.   ||  |:|.::|               |.|...|.|.::.|        ..:..:....
  Fly   189 PTGELLIHN--LQESDESQSFRCRSMHRLTRQVVVSSPTRLRINSHRGIISPSVVEHTAHVQVSQ 251

Zfish    61 DKNAIMSDLKSASSSSSSMIFTHFSGRNVSG-----NGKRKFAVRTWSWWAFFCLQVHVLEAVTQ 120
            |:.|::..:.....|.....|||    |.:|     :|.|   ||...       .:..:||||.
  Fly   252 DEGAVLLCVAQGCPSPEYSWFTH----NGAGPLPVLSGPR---VRLLG-------PILAIEAVTG 302

Zfish   121 GDVAPY------------------------FKTEPGPPEIHLEGNRLVMTCL--AEGSWPLEFK- 158
            .|...|                        .:..|....:|: |......||  :.|| |:..: 
  Fly   303 EDSGVYKCTAGNVGGEASAELRLTVATPIQVEISPNVLSVHM-GGTAEFRCLVTSNGS-PVGMQN 365

Zfish   159 --WMLNNTDI-TAFSPEYKYTISSLQRSNMGVYQCVVRNRMGALLQKKAEIQVAYMGD------- 213
              |..:...: ::...|....:..:.|.|.|:||||||...|...|..||:|   :||       
  Fly   366 ILWYKDGRQLPSSGRVEDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQ---LGDAPPVLLY 427

Zfish   214 -FIDNDQRKTVTQGRAAILNSPAVSCFPRPQVTWFRDGYKIIPSNRIAITLENQLVVLGTAASDA 277
             ||:    :|:..|.|..|...|.. .|.||::|..||:. :|||. ...:...:.|.|...|..
  Fly   428 SFIE----QTLQPGPAVSLKCSAAG-NPTPQISWTLDGFP-LPSNG-RFMIGQYITVHGDVISHV 485

Zfish   278 GRYYVQAVNEKNGENKTSPSIYLNVAANKKYRGSHDSEAPADPVAPVIVIPPRNTTVVAGISEAT 342
            ...:|..  |..||       |..:|.|:..|..|.:......:..:.:||  ..|.|:| ....
  Fly   486 NISHVMV--EDGGE-------YACIAENRAGRVQHAARLNIYGLPYIRLIP--KVTAVSG-ETLN 538

Zfish   343 LECVANARPVEKLSLVWRRNGVEVASGV-------GSFSRRLTIINPT--STDVGMYVCEALLLD 398
            |:|.....|:|::.  |.|.|.|:...:       ||.:     |:|.  ::|.|:|.|.|....
  Fly   539 LKCPVAGYPIEEIH--WERGGRELPDDIRQRVQPDGSLT-----ISPVQKNSDSGVYTCWARNKQ 596

Zfish   399 --SSVKPAEARAFLSITEAPYFTAEPRRKMMGEVEKSVDIQCQARGVPMP-KLEWYKDAVPLSKL 460
              |:.:..|....:....:| |.....:..||:   ...:.|......:| .:.|.||..|:...
  Fly   597 GHSARRSGEVTVIVPPKLSP-FQTNILQLNMGD---RASLTCSVVKGDLPLTINWRKDGRPIDPT 657

Zfish   461 NNPRYKIISSMG--LQVRKLQPSDAGIFQCFARNSAGEAQVHTYLDVTSMAPAFTAPPLDITVTD 523
            .:...|.:....  |.:..|.....|.:.|..||||.|.:....| :.::.|.:...|:|..|..
  Fly   658 QHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQAL-LVNVPPRWIVEPVDANVER 721

Zfish   524 GAVAAFTCRVSGAPKPAIVWRRDTQILASGS-------VQIPRFT-LLESGGLQIQPVVLQDTGN 580
            .......|:..|.|.|:|||::     |:||       |:...|| ||.:|.|.:|.|.....|.
  Fly   722 NRHIMLHCQAQGVPTPSIVWKK-----ATGSKSGEYEEVRERPFTKLLGNGSLLLQHVKEDREGF 781

Zfish   581 YTCYAANSEG-AINASASLTVWSRTSISSPPTDRRVIKGTTAILECGATHDPRVGVRYVW-KKDE 643
            |.|.|.|..| .|.....|.|.|....||......|.||.||:|:|..:.|..:.:  || :..:
  Fly   782 YLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINI--VWMRSGK 844

Zfish   644 ELVSHSRGGRISLQE--------GSLHISQTWSGDIGNYTCDVISEAGNESKEARLEVIELPHSP 700
            ..::.|...:||:::        ..|.|....:.|.|.|.|...:..||:.:..:|:|.|.|..|
  Fly   845 NTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPP 909

Zfish   701 RNLQASLNANDSRSVDLSWMRPFDGNSPLLHYVVELSENN---------SPWRVYLSDVDPSGTG 756
            ..|:|::.:  ||||::.|.....|...:..|:||..|.:         ..|: .:...||....
  Fly   910 SVLEAAMIS--SRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQ-QIEVKDPPHFN 971

Zfish   757 AMVKGLTPARSYQFRVCAVNQVGRGQYSTETNRLMLREEP--PSAPPKNIVASGRTNQSIMVQWQ 819
            ||::.|.||..|.|||.|....||   |..:..|::|.||  |:.||.::.|...::..:::.|.
  Fly   972 AMIENLKPATRYAFRVIAEGSAGR---SAPSQELIVRTEPQRPAGPPLSLSARPLSSTELLISWV 1033

Zfish   820 PPPEPQLNGVLRGYVLRYRLAGLPG-EYQQKNIS------SPEINYCLITELIIWTQYEIQVAAY 877
            .|.....:|.::||.:.|:|:.... .|...::|      :.|:   |::.|..:.:|.:.|.|:
  Fly  1034 APLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSGDGDGGNGEL---LLSGLAKFARYTVVVQAF 1095

Zfish   878 TGAGLGVFSQPVTEYTLQGVPTAPPQGVEAKAVNSTTIEFSWNPPPQQFINGINQGYKLMAWP-- 940
            ...|.|..|:|....|::.||:.||:.|...|::|.:::.||.|||....||:.|||||:..|  
  Fly  1096 NQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLIFEPII 1160

Zfish   941 ---ERSPEEV-----IVVTITPDYHGTRHLGYISGLRKFSWYLTSVLCFTTPGNGPRSPPKLVQT 997
               :.|.:||     ..:|:.           ::||||::.|...||..|..|:|..|.|....:
  Fly  1161 DDIQPSKDEVESRKTTALTMV-----------LTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHS 1214

Zfish   998 FEDIPGPVGRLSFTEILDTSLKVSWEEPVDKNGIITGY-----LVSWEVQGNNQSRVARNLANTT 1057
            .||:|.....:........||.:||..|.:.||:||.|     :|:...:.||:.   |:|.:..
  Fly  1215 EEDVPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREELNNEK---RSLPSQQ 1276

Zfish  1058 LDYKVTGLTSLTTYTLEVAAMTEAGVGTVTSSTISSGVPPELPGPPSNLVISKISSRSATLKFRA 1122
            ..|:..||.....|...|.|.|..|.|  .||.:||.:       .:|.:.::|.|         
  Fly  1277 AYYEAKGLHPHMEYQFWVTASTRVGEG--KSSRVSSQI-------TTNRIPARIIS--------- 1323

Zfish  1123 GDDGKTAISKW--IVEGQVGSIGEDE-EW---KVLYEKENDPEAQMLE-----VPNLTPFTHYRF 1176
              .|...:..|  .|.....::|:.: ||   .|...:.....:|:|:     :.:|.......:
  Fly  1324 --FGGPVVRPWRSTVTLPCTAVGKPKREWFKSDVALRQGGLHNSQLLDSGDLIISSLQLADGGNY 1386

Zfish  1177 RMRQVNIVGPSAVSVPSRVIQTL--QAPPDVAPSSVTVRTASETSLWLRWVPLPESEYNGNPESV 1239
            ..:..|.:|      ..|:..||  |.|| .|| .:.|.:|:.:|:.:.|    :..:.||....
  Fly  1387 SCQVDNGIG------TDRLTHTLIVQVPP-TAP-VLYVTSATSSSILMHW----KCGFTGNAPIT 1439

Zfish  1240 GYRVRVMRADLRGEASTRLLNDRLEREITLEGLEEWTEYQLQIQAFNSIGPGPWSESVKGRTRES 1304
            ||.:...||:  |......|: |......|:||...:.||:.:.|.|.:|..|.|..:..||:..
  Fly  1440 GYTLFYRRAN--GNTDEMQLS-RHASSHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQ 1501

Zfish  1305 VPSGAPENVTAEAMSSSRILVTWGPVPEHEQNGNILGYKVL-FKEKDSDSEAQVNVVKGNL--TQ 1366
            .| |.|.:....|.:|:.:||.....|:   ||..|.|.|| ::....|.:|:..:|...|  .:
  Fly  1502 SP-GHPASTALLAPNSTSLLVRLHSWPD---NGCPLLYFVLQYRAVTDDPDAEWVLVSNALKPQR 1562

Zfish  1367 SVLLRNLRKYVQYEIQVLAFTRIGDGQLS-NPPVLERTKDDVPGPP----------MRLVFPEVR 1420
            .:::.||:....|::::.|....|..|.. |...|  |||..|.||          ..::|..:.
  Fly  1563 RIVINNLQPSTLYQLRMEAHNVAGISQAEFNFVTL--TKDGDPPPPEIMHRGRSGQTTVIFANIN 1625

Zfish  1421 L-------------TEVRVVW--------QPPVDPNGIIMGYQVAYRLDSGDPNQ---FITIE-- 1459
            |             |.:.::.        .||:.....|....:..|.:|....:   :.||.  
  Fly  1626 LLIPTIAAVSGMFCTIIMIIVCYRHMLKNAPPLAEQSQIQKESLENRANSEAAQRERYYATIHKV 1690

Zfish  1460 --VGPDTRQFTASSLTPESAYIFRISA----KTEQGWGSPAQAVVITTEIRER------PQPP-- 1510
              ...|....|:..::|.:.  |::|.    .::...|.||..::.:....||      ..||  
  Fly  1691 SMQNNDKIPETSEDISPYAT--FQLSEAGGNMSQPHHGGPANTLLHSFMYHERALAEGCSSPPPA 1753

Zfish  1511 ----------------RQLRVPQDHVQSRK--------------LLLNWVPGGDGS--SPV---- 1539
                            .:....||.:.|.:              ::.:.......|  ||:    
  Fly  1754 ASKNRRRHSRKTEPESEESESDQDQLTSSRTESSNQHEGKIKHSIIYHGAQSSTSSDLSPMSEQK 1818

Zfish  1540 --------RYFTLQTQELPSGEWITHSSAISHNYSSWEVDRLKPFTSYKLRMMATNDVGDSKYSQ 1596
                    ||...|.|      :.|:::...||     .:::...|:......|||.......|.
  Fly  1819 SLPRRGRSRYHHQQYQ------FSTNTTPRHHN-----SNKMNNNTTSNTNTTATNTTATPSTSS 1872

Zfish  1597 ETDAITT-----LQDVPDEAPMIQSVK---PSTTTSVLVQWQTPKEESVNGVLVGYRLYYRELQY 1653
            .::.|.:     |:.:........|::   |:...|..:..|..|:           .:.::||.
  Fly  1873 NSNKILSPRGGNLKSISSTFKSQDSIQCHIPTLVKSPSISTQQQKQ-----------FHKQQLQN 1926

Zfish  1654 DST--PQDSKRPVNSSQLRTELTAKSTVKTVSNPSLTEFELTQLQKYRRYEIVMTAYNVIGESPP 1716
            .||  .|.|....|||.|:.:           .|.|...:|.||:...:   .:...:.||.||.
  Fly  1927 SSTNNSQHSSSNPNSSSLKQQ-----------QPLLITPKLHQLEANGQ---ELLGLDGIGNSPL 1977

Zfish  1717 SAPVEVFVGEAAPSVAPQNIQINTLSSTQLEVQWEPPPAETQNGIIQGYKILYWEMDSQNETERV 1781
            .|            ..|.:.|...:....:....|||  ...|...|.:     ....|.:.:..
  Fly  1978 VA------------CMPPSSQFRPIPHKSIMPAHEPP--HHHNHSQQSH-----PHQQQQQQQHP 2023

Zfish  1782 KILFRPETNM 1791
            ..|..|.|.|
  Fly  2024 GTLLNPSTAM 2033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdk1aXP_009297968.1 I-set 125..208 CDD:254352 24/112 (21%)
Ig 125..204 CDD:299845 22/108 (20%)
IG_like 222..302 CDD:214653 22/79 (28%)
Ig 236..287 CDD:299845 13/50 (26%)
Ig_3 322..394 CDD:290638 21/80 (26%)
I-set 323..412 CDD:254352 24/99 (24%)
I-set 416..505 CDD:254352 21/91 (23%)
Ig 436..500 CDD:299845 16/66 (24%)
I-set 510..600 CDD:254352 31/98 (32%)
Ig 527..600 CDD:299845 27/81 (33%)
I-set 605..693 CDD:254352 24/96 (25%)
Ig 610..693 CDD:299845 22/91 (24%)
FN3 697..788 CDD:238020 30/99 (30%)
fn3 800..886 CDD:278470 20/92 (22%)
FN3 901..997 CDD:238020 34/105 (32%)
FN3 1002..1090 CDD:238020 26/92 (28%)
FN3 1100..1196 CDD:238020 16/106 (15%)
FN3 1206..1301 CDD:238020 25/94 (27%)
FN3 1308..1397 CDD:238020 23/92 (25%)
FN3 1408..1501 CDD:238020 21/134 (16%)
FN3 1507..1602 CDD:238020 20/140 (14%)
FN3 1616..1722 CDD:238020 25/110 (23%)
FN3 1732..1825 CDD:238020 12/60 (20%)
FN3 1830..1919 CDD:238020
FN3 1931..2021 CDD:238020
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845 6/15 (40%)
I-set 238..327 CDD:254352 18/102 (18%)
Ig 247..327 CDD:299845 18/93 (19%)
I-set 332..418 CDD:254352 24/90 (27%)
IGc2 344..407 CDD:197706 17/64 (27%)
IG_like 432..517 CDD:214653 26/96 (27%)
IGc2 436..507 CDD:197706 23/82 (28%)
I-set 521..610 CDD:254352 24/98 (24%)
IGc2 533..597 CDD:197706 18/71 (25%)
Ig 630..699 CDD:143165 16/68 (24%)
IG_like 714..802 CDD:214653 30/92 (33%)
Ig 725..802 CDD:299845 27/81 (33%)
Ig 823..894 CDD:143165 16/72 (22%)
FN3 906..1006 CDD:238020 31/105 (30%)
FN3 1013..1111 CDD:238020 22/100 (22%)
FN3 1119..1209 CDD:238020 33/100 (33%)
FN3 1219..1313 CDD:238020 29/105 (28%)
Ig 1336..1402 CDD:143165 11/71 (15%)
FN3 1409..1498 CDD:238020 26/97 (27%)
FN3 1515..1588 CDD:238020 19/75 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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